Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0435200-01
CDS Infomation	cds chromosome:IRGSP-1.0:12:14232905:14234854:-1 gene:Os12g0435200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:9-CIS-EPOXYCAROTENOID DIOXYGENASE 2 description:Similar to Zeaxanthin cleavage oxygenase. (Os12t0435200-01)
Sequence	ATGGAGGTACCCATTGCTGCCATGACTTTTGCCCACCCAGCCAATGTTATGACTCTGGCT TCAAGGCAGCCAAAGAGTAAAAGGTCCCATATCTCCCCTGCTACCACGGCTCACCGTAAT CTACAGACTCGCCTGGCTCACCACCACCATGCAACACCAGCTTCATTGCCTATGGCAATC TGCAACACAGTAGACAAAGTGATCAATAGGTTCATTGACCTGCCGGAGCAGCGACCAACG GTGGATCCGCGGCGTGTGCTCTCTGGCAACTTCGCTCCTGTTGATGAGCTGCCCCCGACA AGCTGCCATGTCATCCGCGGCTCCATCCCAAGCTGCCTCGCCGGTGGGGTCTACATCCGC AATGGTCCCAACCCACAGCACCGGCTTCCCCAGCGAACACACCACCTCTTCGATGGTGAT GGCATGCTCCACTCCCTTCTCATTCCCTCGGCCTCGTCAACACTGTTGTCGGAGCCTGTG CTTTGTTCACGCTATGTGCACACGTACAAGTATCTCTTGGAGCGTGAGACCGGAGGACCG GTTTTACCAAACTTCTTCGCTGGCTTCCATGGAGTGGCCGGCTTGGCTCGTGCAGTGGTC ATGATCGCAAGAGTGCTTGCTGGTCAAATTAACCTGAACAAGGGCTTCGGGCTGGCCAAC ACTAGCATCACTCTTTTTGCAGATTGCCTATATGCGCTATGCGAATCTGACCTTCCCTAC TCCATGCACATCAACCCAGCCAACGGAGAAGTCACCACACTTGGTCGATGTGACTTTGGT GGTGATCTTTCTTTTAGGATGACAGCACACCCCAAGAAGGACCCGGTCACCATGGAGTTG TTTGCTTTTCGCTACAATGTCTTCCAACCATTCATAACATACTTCTGGTTCGATCGAGCA GGCAGCAAGGTCGCAGATGTGCCCATCTTGTCCTTGCAGAAACCATCGGTGATGCATGAC TTTGCAATAACAGAGAGATATGCAATCTTTCCAGAGTCACAACTCATCGTTAATCCCATG GACATGGTCATGCGGGGGAGCTCGTTGGTAGGATTGGACCGTACCATGGTGCCACGGATT GGCGTGCTTCCAAGGTACGCCAAGGATGAGTCAGACATGAGATGGTTTGAGGTGCCTAGA TTTAATATGTTGCACACGACGAATGGTTGGGAAGAGGCTGATGGAGAGGAGATTGTGCTC GTGGCACCCAATATCCTATCTATCGAACACATGCTAGGAAACATGGAGCTCATGCGAGCT CGTGTCGACATGGTACGTATCAACCTCTGCACCGGTGACGTGTCGTGCACTGCACTCTCA CCGGAGAGCCTTGAGTTCGGTGTCATCCACCAAGGTTATGTTGGTCGCAAAAATCGCTAT GGCTACTTTGGTGTAAGTGGTCCGTTGCCCAAGATCAAGGGGATAAGAAAGCTTGACTTT GATCTCGTCGGCTCTGGTGATTGCACGGTTGGACGTCGTGACTTTGGTCTAGGGTGCTTT GCTGGGGAACCATTTTTTGTTCCAGACAACATCGACGGGTATGGAAACGAGGATAGTGGT TATGTGGTGTGCTACACCCATGAAGAGGACACCGGAGAGAGTTGGTTTGTGGTGATGGAT GCAAAGTCTCCAGAGCTAGACATTGTTGCAGAAGTGCAACTTCCTAGTCGTATCCCCTAT GGCTTTCATGGTATTTTTGTCAAACAGGCCGAACTTCTCGCACAACAATAA

Peptide Sequence

PEP ID	Os12t0435200-01
PEP Infomation	pep chromosome:IRGSP-1.0:12:14232905:14234854:-1 gene:Os12g0435200 transcript:Os12t0435200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:9-CIS-EPOXYCAROTENOID DIOXYGENASE 2 description:Similar to Zeaxanthin cleavage oxygenase. (Os12t0435200-01)
Sequence	MEVPIAAMTFAHPANVMTLASRQPKSKRSHISPATTAHRNLQTRLAHHHHATPASLPMAI CNTVDKVINRFIDLPEQRPTVDPRRVLSGNFAPVDELPPTSCHVIRGSIPSCLAGGVYIR NGPNPQHRLPQRTHHLFDGDGMLHSLLIPSASSTLLSEPVLCSRYVHTYKYLLERETGGP VLPNFFAGFHGVAGLARAVVMIARVLAGQINLNKGFGLANTSITLFADCLYALCESDLPY SMHINPANGEVTTLGRCDFGGDLSFRMTAHPKKDPVTMELFAFRYNVFQPFITYFWFDRA GSKVADVPILSLQKPSVMHDFAITERYAIFPESQLIVNPMDMVMRGSSLVGLDRTMVPRI GVLPRYAKDESDMRWFEVPRFNMLHTTNGWEEADGEEIVLVAPNILSIEHMLGNMELMRA RVDMVRINLCTGDVSCTALSPESLEFGVIHQGYVGRKNRYGYFGVSGPLPKIKGIRKLDF DLVGSGDCTVGRRDFGLGCFAGEPFFVPDNIDGYGNEDSGYVVCYTHEEDTGESWFVVMD AKSPELDIVAEVQLPSRIPYGFHGIFVKQAELLAQQ

Transcript Sequence

Transcript ID	Os12t0435200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:14232905:14234854:-1 gene:Os12g0435200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:9-CIS-EPOXYCAROTENOID DIOXYGENASE 2 description:Similar to Zeaxanthin cleavage oxygenase. (Os12t0435200-01)
Sequence	GCTGAATTCATATTCCCATCTGAGCCAACCATGCATTGGTGTTTTGCATAATGGAGGTAC CCATTGCTGCCATGACTTTTGCCCACCCAGCCAATGTTATGACTCTGGCTTCAAGGCAGC CAAAGAGTAAAAGGTCCCATATCTCCCCTGCTACCACGGCTCACCGTAATCTACAGACTC GCCTGGCTCACCACCACCATGCAACACCAGCTTCATTGCCTATGGCAATCTGCAACACAG TAGACAAAGTGATCAATAGGTTCATTGACCTGCCGGAGCAGCGACCAACGGTGGATCCGC GGCGTGTGCTCTCTGGCAACTTCGCTCCTGTTGATGAGCTGCCCCCGACAAGCTGCCATG TCATCCGCGGCTCCATCCCAAGCTGCCTCGCCGGTGGGGTCTACATCCGCAATGGTCCCA ACCCACAGCACCGGCTTCCCCAGCGAACACACCACCTCTTCGATGGTGATGGCATGCTCC ACTCCCTTCTCATTCCCTCGGCCTCGTCAACACTGTTGTCGGAGCCTGTGCTTTGTTCAC GCTATGTGCACACGTACAAGTATCTCTTGGAGCGTGAGACCGGAGGACCGGTTTTACCAA ACTTCTTCGCTGGCTTCCATGGAGTGGCCGGCTTGGCTCGTGCAGTGGTCATGATCGCAA GAGTGCTTGCTGGTCAAATTAACCTGAACAAGGGCTTCGGGCTGGCCAACACTAGCATCA CTCTTTTTGCAGATTGCCTATATGCGCTATGCGAATCTGACCTTCCCTACTCCATGCACA TCAACCCAGCCAACGGAGAAGTCACCACACTTGGTCGATGTGACTTTGGTGGTGATCTTT CTTTTAGGATGACAGCACACCCCAAGAAGGACCCGGTCACCATGGAGTTGTTTGCTTTTC GCTACAATGTCTTCCAACCATTCATAACATACTTCTGGTTCGATCGAGCAGGCAGCAAGG TCGCAGATGTGCCCATCTTGTCCTTGCAGAAACCATCGGTGATGCATGACTTTGCAATAA CAGAGAGATATGCAATCTTTCCAGAGTCACAACTCATCGTTAATCCCATGGACATGGTCA TGCGGGGGAGCTCGTTGGTAGGATTGGACCGTACCATGGTGCCACGGATTGGCGTGCTTC CAAGGTACGCCAAGGATGAGTCAGACATGAGATGGTTTGAGGTGCCTAGATTTAATATGT TGCACACGACGAATGGTTGGGAAGAGGCTGATGGAGAGGAGATTGTGCTCGTGGCACCCA ATATCCTATCTATCGAACACATGCTAGGAAACATGGAGCTCATGCGAGCTCGTGTCGACA TGGTACGTATCAACCTCTGCACCGGTGACGTGTCGTGCACTGCACTCTCACCGGAGAGCC TTGAGTTCGGTGTCATCCACCAAGGTTATGTTGGTCGCAAAAATCGCTATGGCTACTTTG GTGTAAGTGGTCCGTTGCCCAAGATCAAGGGGATAAGAAAGCTTGACTTTGATCTCGTCG GCTCTGGTGATTGCACGGTTGGACGTCGTGACTTTGGTCTAGGGTGCTTTGCTGGGGAAC CATTTTTTGTTCCAGACAACATCGACGGGTATGGAAACGAGGATAGTGGTTATGTGGTGT GCTACACCCATGAAGAGGACACCGGAGAGAGTTGGTTTGTGGTGATGGATGCAAAGTCTC CAGAGCTAGACATTGTTGCAGAAGTGCAACTTCCTAGTCGTATCCCCTATGGCTTTCATG GTATTTTTGTCAAACAGGCCGAACTTCTCGCACAACAATAAGCATGTTTGTGAAAAACCT TACCCACTACTCTACGTATAAAGATAATACTTCATAACTTCATAAGCGAGATCTGCTACA AATGTACTTTCCAGCATTTGATTTAGAATGGTCATAAGAGAAGTATTATAGTCTGGTTGT CATTTCACATCTATCTATATATCTTTTATT