Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0420200-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:13103675:13106278:1 gene:Os12g0420200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:LIGHT-GREEN LEAVES 1 description:Chloroplast stem-loop-binding protein of 41 kDa b, Chlorophyll biosynthesis and photosynthesis (Os12t0420200-01)
Sequence

ATGGCAGCAACAGCCTCCCTGAAGAGCAGCCTCCTGCTACCATCTCCTATCTCTGACTTC
AGTAGTGCAGCACTCTCCATCTCAACCCAGGCTAGGAGGAGGTCATGGCAGCCAAGGGGG
GCAAGGATGCAGGTAGCAGCAGCTGCAGACTCCAAGAACATTCTTGTGATGGGGGGAACC
AGGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGGTCACATTG
TTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGAGAGTCAGATGCAGAGTAT
GCAGAGTTCTCTTCAAAGGTGTTGCACTTGAAAGGTGACAGGCAAGACTTTGATTTCGTT
AAGACAAGCCTTGCGGCAAAGGGCTTCGATGTTGTTTACGACATAAACGGGAGAGAAGCT
GTTGAGGTAGCCCCAATCCTAGACGCATTGCCGAACCTTGAACAGTACATCTACTGCTCA
TCAGCAGGAGTGTACCTGAAATCAGACCTGCTCCCGCACTTCGAGACCGACGCCGTCGAC
CCGAAGAGCCGGCACAAGGGGAAGCTGGAGACGGAGAGCCTGCTGGAGACCCGGGACGTG
AACTGGACGTCGATCAGGCCGGTGTACATCTACGGCCCGCTCAACTACAACCCCGTGGAG
GAGTGGTTCTTCCACCGGCTCAAGGCTGGCCGCCCCATCCCTGTCCCCGGTGCCGGCAAC
CAAATCACCCAGCTCGGCCATGTCAAGGACTTGGCGACGGCGTTCGTGCTGGCGCTCGGC
AACCCGAAGGCGAGCAAGCAGGTGTTCAACATCTCCGGCGCCAAGTACGTCACCTTCGAC
GGTCTAGCACGGGCGTGCGCCAAGGCTGGAGGATTCCCCGAGCCGGAGATCGTCCACTAC
AACCCCAAGGACTTCGATTTCGGGAAGAAGAAGGCCTTCCCCTTCAGAGACCAGCATTTC
TTCGCGTCAATCGAGAAGGCGACCTTGGAGCTCGGGTGGAAGCCGGAGTACGACCTGGTG
GAGGGCCTCACCGACTCGTACAACCTCGACTTCGGCCGCGGCACGTTCAGGAAGGCGGCC
GACTTCACCACCGACGACATGATCCTCGGCAAGAAGCTCGTCAGCGTCTGA

Peptide Sequence

PEP ID

Os12t0420200-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:13103675:13106278:1 gene:Os12g0420200 transcript:Os12t0420200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:LIGHT-GREEN LEAVES 1 description:Chloroplast stem-loop-binding protein of 41 kDa b, Chlorophyll biosynthesis and photosynthesis (Os12t0420200-01)
Sequence

MAATASLKSSLLLPSPISDFSSAALSISTQARRRSWQPRGARMQVAAAADSKNILVMGGT
RFIGVFLSRLLVKEGHQVTLFTRGKAPITQQLPGESDAEYAEFSSKVLHLKGDRQDFDFV
KTSLAAKGFDVVYDINGREAVEVAPILDALPNLEQYIYCSSAGVYLKSDLLPHFETDAVD
PKSRHKGKLETESLLETRDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPGAGN
QITQLGHVKDLATAFVLALGNPKASKQVFNISGAKYVTFDGLARACAKAGGFPEPEIVHY
NPKDFDFGKKKAFPFRDQHFFASIEKATLELGWKPEYDLVEGLTDSYNLDFGRGTFRKAA
DFTTDDMILGKKLVSV

Transcript Sequence

Transcript ID

Os12t0420200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:13103675:13106278:1 gene:Os12g0420200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:LIGHT-GREEN LEAVES 1 description:Chloroplast stem-loop-binding protein of 41 kDa b, Chlorophyll biosynthesis and photosynthesis (Os12t0420200-01)
Sequence

TCTTGTTTGTACCTTGTTTTTTTTTATAACAGCTCAAGCACAGGGAGAGGAGGGTTGAGG
AGAGTAAACAAGAAAAAAAAGAGAGAGAGATGGCAGCAACAGCCTCCCTGAAGAGCAGCC
TCCTGCTACCATCTCCTATCTCTGACTTCAGTAGTGCAGCACTCTCCATCTCAACCCAGG
CTAGGAGGAGGTCATGGCAGCCAAGGGGGGCAAGGATGCAGGTAGCAGCAGCTGCAGACT
CCAAGAACATTCTTGTGATGGGGGGAACCAGGTTCATTGGTGTCTTCTTGTCCAGGCTCC
TTGTCAAGGAGGGGCACCAGGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGC
AGTTGCCAGGAGAGTCAGATGCAGAGTATGCAGAGTTCTCTTCAAAGGTGTTGCACTTGA
AAGGTGACAGGCAAGACTTTGATTTCGTTAAGACAAGCCTTGCGGCAAAGGGCTTCGATG
TTGTTTACGACATAAACGGGAGAGAAGCTGTTGAGGTAGCCCCAATCCTAGACGCATTGC
CGAACCTTGAACAGTACATCTACTGCTCATCAGCAGGAGTGTACCTGAAATCAGACCTGC
TCCCGCACTTCGAGACCGACGCCGTCGACCCGAAGAGCCGGCACAAGGGGAAGCTGGAGA
CGGAGAGCCTGCTGGAGACCCGGGACGTGAACTGGACGTCGATCAGGCCGGTGTACATCT
ACGGCCCGCTCAACTACAACCCCGTGGAGGAGTGGTTCTTCCACCGGCTCAAGGCTGGCC
GCCCCATCCCTGTCCCCGGTGCCGGCAACCAAATCACCCAGCTCGGCCATGTCAAGGACT
TGGCGACGGCGTTCGTGCTGGCGCTCGGCAACCCGAAGGCGAGCAAGCAGGTGTTCAACA
TCTCCGGCGCCAAGTACGTCACCTTCGACGGTCTAGCACGGGCGTGCGCCAAGGCTGGAG
GATTCCCCGAGCCGGAGATCGTCCACTACAACCCCAAGGACTTCGATTTCGGGAAGAAGA
AGGCCTTCCCCTTCAGAGACCAGCATTTCTTCGCGTCAATCGAGAAGGCGACCTTGGAGC
TCGGGTGGAAGCCGGAGTACGACCTGGTGGAGGGCCTCACCGACTCGTACAACCTCGACT
TCGGCCGCGGCACGTTCAGGAAGGCGGCCGACTTCACCACCGACGACATGATCCTCGGCA
AGAAGCTCGTCAGCGTCTGAGCTCGCCGCCGTCCTTTCCGGACAGCGGACGGATTGCTTG
CTGCGCGACGCGAGCGGCTGACCGGCCGGGCCGCCATGGCCGGTGGGCAGGAGCAAGCGG
AGACGGTTTCAGTTTTGTTATCAACGCTGGTTTGGTACAATATGGATAGTTGGATACACG
CGTACAGGCGTAAGCTGCAATGTATTGGGATTGGGAAACTGTAAGATGTGATACAAGGGA
GACTAAACTTCATCTAATATATATGATATAACTAGC