Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0409000-01
CDS Infomation	cds chromosome:IRGSP-1.0:12:12392759:12396626:-1 gene:Os12g0409000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:serine hydroxymethyltransferase 3 description:Similar to Serine hydroxymethyltransferase. (Os12t0409000-01)
Sequence	ATGGCGATGGCTTCGCACCACCTCGCCCAGCCGCCCACGCGCGCGGCTCTCTCCTCGCGC CCCACCTACCCGCTCTCCAGCCATCACCACTCCTCCCGTCTCCAGCTCCCGCTCGTCAGC GGGGCGCGGCGCAGCAGGCTGTCCCCCGCGGTGGCGACGTCCCCGGTCGCCGCCCCAGCG ATGGACGCCGTGGCCGACTGGGGGCTGACCACTCTGGAGGAGGCTGACCCGGAGGTGTAC GACCTCGTCGAGCGCGAGAAGCGGCGGCAGCGCGCGGGCGTCGAGCTCATCGCGTCGGAG AACTTCACCTCGCTCGCCGTCATGGAGGCGCTGGGCTCGCCGCTCACCAACAAGTACTCC GAGGGCATGCCGGGGTCCCGCTACTACGGAGGCAACGAGGTCATCGACGAGGTGGAGGAG CTCTGCCGCGCCCGCGCGCTCGCCGCCTTCCACCTCGACCCCGAGGCCTGGGGCGTCAAC GTGCAGCCCTACTCCGGCTCGCCGGCGAACTTCGCCGCCTACACCGGGCTGCTCCAACCC CACGAGCGGATCATGGGGCTCGATTTGCCGTCCGGCGGCCACCTCACGCACGGCTACTAC ACCGCCGGCGGCAAAAAGATCTCCGCCACGTCCATCTACTTCGAGAGCCTGCCGTACAAG GTGAGCTCCGAGACAGGATACGTCGATTATGATAAGCTGGAGGAGAAGGCCATGGATTTT CGGCCCAAGCTCATCATCTGCGGCGGGAGCGCGTACCCGCGGGATTGGGATTACGCCAGG TTCAGGGCCATCGCGGATAAGTGCGGCGCCATGTTGCTCTGCGACATGGCTCACATCAGT GGCCTAGTTGCCGCGCAGGAGGCTGCAAATCCTTTTCAATATTCTGATGTGGTTACCACC ACCACCCACAAGAGTCTCCGAGGGCCAAGATCTGGTATGATCTTCTACAGGAAGGGCCTG AAGCCTCCCAAGAAAGGCCAGCCTGAGGGCGCTCTGTATGACTACGAGGACAGGATCAAC TTCGCAGTGTTTCCGTCGCTCCAAGGGGGCCCTCACAACCACCAAATTGCTGCGCTAGCG GTTGGTTTGAAGCAGACTATGTCACCTGGATTCAAGTCTTATATTAAGCAGGTCAAGGCC AATGCTGTTGCCCTTGGTAACCATTTGATGAGTAAGGGCTACAAATTGGTTACTGACGGA ACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGACTGGTAACAAAGTT GAGAAGGTCTGTGATTTGTGCAGCATTACACTGAACAAAAATGCTGTCTTTGGGGATAGC AGTGCAATGTCACCTGGTGGTGTCCGCATTGGTACACCTGCCATGACATCAAGGGGTTTG GTAGAGGAGGACTTTGTACAGATCGCCGAGTTCCTTCACCAGGCAGTGACCATCTGCTTG GATGTTCAGAAGGAGCGTGGCAAGCTTCTCAAGTACTTCAACGAGGGCCTGGAGAACAAC AAGGACATTGAGGACCTCAGGGCGGAGGTGGAGAAGTTTGCCACTTCATTCGAGATGCCT GGCTTCAGGGTATCCGACATGAAGTACAAGGATTAG

Peptide Sequence

PEP ID	Os12t0409000-01
PEP Infomation	pep chromosome:IRGSP-1.0:12:12392759:12396626:-1 gene:Os12g0409000 transcript:Os12t0409000-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:serine hydroxymethyltransferase 3 description:Similar to Serine hydroxymethyltransferase. (Os12t0409000-01)
Sequence	MAMASHHLAQPPTRAALSSRPTYPLSSHHHSSRLQLPLVSGARRSRLSPAVATSPVAAPA MDAVADWGLTTLEEADPEVYDLVEREKRRQRAGVELIASENFTSLAVMEALGSPLTNKYS EGMPGSRYYGGNEVIDEVEELCRARALAAFHLDPEAWGVNVQPYSGSPANFAAYTGLLQP HERIMGLDLPSGGHLTHGYYTAGGKKISATSIYFESLPYKVSSETGYVDYDKLEEKAMDF RPKLIICGGSAYPRDWDYARFRAIADKCGAMLLCDMAHISGLVAAQEAANPFQYSDVVTT TTHKSLRGPRSGMIFYRKGLKPPKKGQPEGALYDYEDRINFAVFPSLQGGPHNHQIAALA VGLKQTMSPGFKSYIKQVKANAVALGNHLMSKGYKLVTDGTENHLVLWDLRPLGLTGNKV EKVCDLCSITLNKNAVFGDSSAMSPGGVRIGTPAMTSRGLVEEDFVQIAEFLHQAVTICL DVQKERGKLLKYFNEGLENNKDIEDLRAEVEKFATSFEMPGFRVSDMKYKD

Transcript Sequence

Transcript ID	Os12t0409000-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:12392759:12396626:-1 gene:Os12g0409000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:serine hydroxymethyltransferase 3 description:Similar to Serine hydroxymethyltransferase. (Os12t0409000-01)
Sequence	AGCCTACCCGAGGCTCCCCTCTCCACTCCCCTTCCCTCACCCGCGCCGCATCGCAGCCGC TATCCGCGTGGGCATTCCGCCGAGCACCTGGCGCGCATGGCGATGGCTTCGCACCACCTC GCCCAGCCGCCCACGCGCGCGGCTCTCTCCTCGCGCCCCACCTACCCGCTCTCCAGCCAT CACCACTCCTCCCGTCTCCAGCTCCCGCTCGTCAGCGGGGCGCGGCGCAGCAGGCTGTCC CCCGCGGTGGCGACGTCCCCGGTCGCCGCCCCAGCGATGGACGCCGTGGCCGACTGGGGG CTGACCACTCTGGAGGAGGCTGACCCGGAGGTGTACGACCTCGTCGAGCGCGAGAAGCGG CGGCAGCGCGCGGGCGTCGAGCTCATCGCGTCGGAGAACTTCACCTCGCTCGCCGTCATG GAGGCGCTGGGCTCGCCGCTCACCAACAAGTACTCCGAGGGCATGCCGGGGTCCCGCTAC TACGGAGGCAACGAGGTCATCGACGAGGTGGAGGAGCTCTGCCGCGCCCGCGCGCTCGCC GCCTTCCACCTCGACCCCGAGGCCTGGGGCGTCAACGTGCAGCCCTACTCCGGCTCGCCG GCGAACTTCGCCGCCTACACCGGGCTGCTCCAACCCCACGAGCGGATCATGGGGCTCGAT TTGCCGTCCGGCGGCCACCTCACGCACGGCTACTACACCGCCGGCGGCAAAAAGATCTCC GCCACGTCCATCTACTTCGAGAGCCTGCCGTACAAGGTGAGCTCCGAGACAGGATACGTC GATTATGATAAGCTGGAGGAGAAGGCCATGGATTTTCGGCCCAAGCTCATCATCTGCGGC GGGAGCGCGTACCCGCGGGATTGGGATTACGCCAGGTTCAGGGCCATCGCGGATAAGTGC GGCGCCATGTTGCTCTGCGACATGGCTCACATCAGTGGCCTAGTTGCCGCGCAGGAGGCT GCAAATCCTTTTCAATATTCTGATGTGGTTACCACCACCACCCACAAGAGTCTCCGAGGG CCAAGATCTGGTATGATCTTCTACAGGAAGGGCCTGAAGCCTCCCAAGAAAGGCCAGCCT GAGGGCGCTCTGTATGACTACGAGGACAGGATCAACTTCGCAGTGTTTCCGTCGCTCCAA GGGGGCCCTCACAACCACCAAATTGCTGCGCTAGCGGTTGGTTTGAAGCAGACTATGTCA CCTGGATTCAAGTCTTATATTAAGCAGGTCAAGGCCAATGCTGTTGCCCTTGGTAACCAT TTGATGAGTAAGGGCTACAAATTGGTTACTGACGGAACAGAGAACCATCTTGTTCTCTGG GATCTGCGCCCTCTTGGCTTGACTGGTAACAAAGTTGAGAAGGTCTGTGATTTGTGCAGC ATTACACTGAACAAAAATGCTGTCTTTGGGGATAGCAGTGCAATGTCACCTGGTGGTGTC CGCATTGGTACACCTGCCATGACATCAAGGGGTTTGGTAGAGGAGGACTTTGTACAGATC GCCGAGTTCCTTCACCAGGCAGTGACCATCTGCTTGGATGTTCAGAAGGAGCGTGGCAAG CTTCTCAAGTACTTCAACGAGGGCCTGGAGAACAACAAGGACATTGAGGACCTCAGGGCG GAGGTGGAGAAGTTTGCCACTTCATTCGAGATGCCTGGCTTCAGGGTATCCGACATGAAG TACAAGGATTAGGCGGCATCGTGCACATCGTCCTCTTTCTCTTGCCCTGAACTTTGGCGC CCTTGAAACCTGATTACTGTGGCGTGAATCGTGGTGTATGGATTTTGCTGAACTCTGGGT AGTCTCTAACCGCTTTCGTCTACCTGAGCTGGTTGTGCCATTCAGTCGTTAAATGCTGGA ATTGTAATGATGTGGTATAATAATAATAACTAGCATGGTGGTCCGCGCAGATTGCGCGGC TAGCATCATTATATTTTCTCTC