Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0407900-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:12349459:12350966:1 gene:Os12g0407900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os12t0407900-01)
Sequence

ATGGGCGGAGATCCCACCGCCGACCCCTCCTCCGCATACTTCATCGACGCCGACCACCCG
TACGCCGCCGCCGCCGCCTCCGCGCTCACCTCCCACCGCTCCAGGTCCAAGTGGTCCCAC
CTCTCCTCCCTCGCCGTGCCCGATCCCCTCCCGGCCTCCGCCGTCGCGGCGGTCCCCCTC
CTGCTCCGCCGCCGCCCCCACGTGGCCCTCAGCTTCCACCTCTTCGCCACCCGCCGCCTC
CTCCCCTCTGGCTCTCCGCCCCCGCTCCTCCTCTCCGTCTCCGCCGCCCATGTCGCCGCC
GCTTCCCGCCTCCGCCGCGCCGCCATCTCCCTCCTCTCCTCCGCCGCCCGCCACTACCCG
CATTCTCAAATCTTCGCCGCCCTGGCCGCCACCTACCGCCGGTTCGCCTCCGCGCCCTTC
GTCTTTGACCTTCTCCTCCTCGCCTACCTCCGCTCCCGCCGCGACGCCCTCGCCGCGGCC
TCCGTCGCCCGCCGCATCCTCGCTGCCGGCGCCCACCCCCTCCCCTCCACCTCCGCCGCC
CTCCTCCGCTCCCTCCCCTCCGCCGCCGCGGCCCTCGACATGTACCGCGAAATCTACACG
CGCCCGAGTTCAAGGATCAACAGCCAGCTACTGCCGACCGTTCATACCTTCAACTCCCTC
CTCCTCGCTTTCTACCGTGAAGGGAAGTGCGATGTTTTCAAGGTTGTGCTCCAGGAAATG
GACAGATATTCCTGCGTACACAATGTGTGCACCTACAATATCCGGATGGCCGCGTATTGT
GATAGCAAGGAGGTGGAGAAGGCACGAGGGCTGTGGGATGAGATGGTTGAGGGAGGAATC
CAACCGGATGTTCCCGCGTACAACACGATGATCAGTGGGTACTGTGGTGTGGGGGAGGTA
GGTATGGCAGAGGAGATGTTTAAGGATATGGAGATGGGTGGGATCGACCCAAGCGTTACG
ACATTTGAATGGTTGGTTAGAGGGCATTGTAGGGTGGGGGATATCGATGCGGCAATGCTT
GTGCGTGCAGACATGAGCAGGAGGGGGTTCCAGATGGCGGCAGAGGTTGTAGAGGAGGTG
GTGAATGTACTGTGTCAGAAGAAGAGAGTGAAGGAGGCATTAGGTGTTTTGAAGGAAGAG
ATGAGGAAGGAAGAGTTTGTGCCAAGTCGGGAATGTTACGAGGTATTGATAAGGGAACTT
TGTGAGCAAGGGGAGGTGGAGGTGGCAATGAGACTCCAGGCGGAGATGGCTGGTATGGGA
TTCAAGGTTGGCAGTGAGGTGTACTGTGCCTTTGTCTGTGCCTATGAGAAGGCTGAGGAT
TATGAGATGGCAGAGAAGTTGAGGAAAGAATTGTCGGTGATAAGCATTCAGGATGGATGA

Peptide Sequence

PEP ID

Os12t0407900-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:12349459:12350966:1 gene:Os12g0407900 transcript:Os12t0407900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os12t0407900-01)
Sequence

MGGDPTADPSSAYFIDADHPYAAAAASALTSHRSRSKWSHLSSLAVPDPLPASAVAAVPL
LLRRRPHVALSFHLFATRRLLPSGSPPPLLLSVSAAHVAAASRLRRAAISLLSSAARHYP
HSQIFAALAATYRRFASAPFVFDLLLLAYLRSRRDALAAASVARRILAAGAHPLPSTSAA
LLRSLPSAAAALDMYREIYTRPSSRINSQLLPTVHTFNSLLLAFYREGKCDVFKVVLQEM
DRYSCVHNVCTYNIRMAAYCDSKEVEKARGLWDEMVEGGIQPDVPAYNTMISGYCGVGEV
GMAEEMFKDMEMGGIDPSVTTFEWLVRGHCRVGDIDAAMLVRADMSRRGFQMAAEVVEEV
VNVLCQKKRVKEALGVLKEEMRKEEFVPSRECYEVLIRELCEQGEVEVAMRLQAEMAGMG
FKVGSEVYCAFVCAYEKAEDYEMAEKLRKELSVISIQDG

Transcript Sequence

Transcript ID

Os12t0407900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:12349459:12350966:1 gene:Os12g0407900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os12t0407900-01)
Sequence

AATTTCGAAAGGAGTCCCGTTCCGTCCCGTCCGAGCCGTCGCCACCATGGGCGGAGATCC
CACCGCCGACCCCTCCTCCGCATACTTCATCGACGCCGACCACCCGTACGCCGCCGCCGC
CGCCTCCGCGCTCACCTCCCACCGCTCCAGGTCCAAGTGGTCCCACCTCTCCTCCCTCGC
CGTGCCCGATCCCCTCCCGGCCTCCGCCGTCGCGGCGGTCCCCCTCCTGCTCCGCCGCCG
CCCCCACGTGGCCCTCAGCTTCCACCTCTTCGCCACCCGCCGCCTCCTCCCCTCTGGCTC
TCCGCCCCCGCTCCTCCTCTCCGTCTCCGCCGCCCATGTCGCCGCCGCTTCCCGCCTCCG
CCGCGCCGCCATCTCCCTCCTCTCCTCCGCCGCCCGCCACTACCCGCATTCTCAAATCTT
CGCCGCCCTGGCCGCCACCTACCGCCGGTTCGCCTCCGCGCCCTTCGTCTTTGACCTTCT
CCTCCTCGCCTACCTCCGCTCCCGCCGCGACGCCCTCGCCGCGGCCTCCGTCGCCCGCCG
CATCCTCGCTGCCGGCGCCCACCCCCTCCCCTCCACCTCCGCCGCCCTCCTCCGCTCCCT
CCCCTCCGCCGCCGCGGCCCTCGACATGTACCGCGAAATCTACACGCGCCCGAGTTCAAG
GATCAACAGCCAGCTACTGCCGACCGTTCATACCTTCAACTCCCTCCTCCTCGCTTTCTA
CCGTGAAGGGAAGTGCGATGTTTTCAAGGTTGTGCTCCAGGAAATGGACAGATATTCCTG
CGTACACAATGTGTGCACCTACAATATCCGGATGGCCGCGTATTGTGATAGCAAGGAGGT
GGAGAAGGCACGAGGGCTGTGGGATGAGATGGTTGAGGGAGGAATCCAACCGGATGTTCC
CGCGTACAACACGATGATCAGTGGGTACTGTGGTGTGGGGGAGGTAGGTATGGCAGAGGA
GATGTTTAAGGATATGGAGATGGGTGGGATCGACCCAAGCGTTACGACATTTGAATGGTT
GGTTAGAGGGCATTGTAGGGTGGGGGATATCGATGCGGCAATGCTTGTGCGTGCAGACAT
GAGCAGGAGGGGGTTCCAGATGGCGGCAGAGGTTGTAGAGGAGGTGGTGAATGTACTGTG
TCAGAAGAAGAGAGTGAAGGAGGCATTAGGTGTTTTGAAGGAAGAGATGAGGAAGGAAGA
GTTTGTGCCAAGTCGGGAATGTTACGAGGTATTGATAAGGGAACTTTGTGAGCAAGGGGA
GGTGGAGGTGGCAATGAGACTCCAGGCGGAGATGGCTGGTATGGGATTCAAGGTTGGCAG
TGAGGTGTACTGTGCCTTTGTCTGTGCCTATGAGAAGGCTGAGGATTATGAGATGGCAGA
GAAGTTGAGGAAAGAATTGTCGGTGATAAGCATTCAGGATGGATGATATTTTCCTTATCT
TTACACAGTGATGCATGATTTTTCATCTCTGTTCATTGCAATGAAAAAGTCTGGTAAAAT
TCATGTCG