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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0403800-02
CDS Infomation

cds chromosome:IRGSP-1.0:12:12075143:12087665:1 gene:Os12g0403800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Exosome complex exonuclease RRP42. (Os12t0403800-01);Exoribonuclease domain containing protein. (Os12t0403800-02)
Sequence

ATGGTTGGGCTTTCGGAAGGAGAGAAGCACTTCATCCGCGGGGGCATCGCGCAGGACCTC
CGCACCGACGGCCGCAGGCGGCTGCAGTTCCGGGCCATCTCGGTCGAGACCGGAGTCATA
CCTCAGGCAAACGGCTCTGCGCGTGTTAGACTCGGTGCGACTGAAGTCATAGCTACTGTA
AAGGCTGAGTTGGGGAAACCAAGCATTCTTCATCCTGATAAAGGGAAAGTTTCCATTTTT
GTTGATTGCAGCCCAACTGCAGCACCCATGTTTGAGGGTAGAGGTTCTGAAGAATTTTCT
GCTGAGCTCTGTGTTGCACTGCAAAGATGCTTACTCGGTGGTAAAAGTGGGGCAGGGGCT
GCAATTGATTTATCCTCACTGATTGTCGTTGATGGAAAGGTCTGCTGGGATCTCTACATT
GATGGACTTGTTGTTAGTTCTGATGGAAATTTGCTTGATGCATTGGCTGCTGCAATAAAG
GTGGCTTTGAGTGATACAGGTATCCCAAAAGTCAATGTTTCTCTTAGTGCTACAACAGAT
GAGGAACCTGAAGTTAATGTTAGTGATGAAGAATTTTTGCAATTTGACACCTCCAGTGTG
CCTGTTATTGTTACATTGACGAAGGTAGGTAAGCACTACATTGTGGATGCTACCTCAGAG
GAAGAATCTCAGATGAGCTCTGCGGTTTCAGTATCAGTTAATAGGCATGGTCAAATACGT
GGATTGACTAAGAGGGGCGGTGCAGGGTTGGATCCAAGTGTCATTTTTGATATGATATCT
GTGGCTAAGCATGTAAGTCGACAATTCATCTCGGTATTGGATTCGGAGACATTAGCTGCT
GAAGCGGCTGAGTAG

Peptide Sequence

PEP ID

Os12t0403800-02
PEP Infomation

pep chromosome:IRGSP-1.0:12:12075143:12087665:1 gene:Os12g0403800 transcript:Os12t0403800-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Exosome complex exonuclease RRP42. (Os12t0403800-01);Exoribonuclease domain containing protein. (Os12t0403800-02)
Sequence

MVGLSEGEKHFIRGGIAQDLRTDGRRRLQFRAISVETGVIPQANGSARVRLGATEVIATV
KAELGKPSILHPDKGKVSIFVDCSPTAAPMFEGRGSEEFSAELCVALQRCLLGGKSGAGA
AIDLSSLIVVDGKVCWDLYIDGLVVSSDGNLLDALAAAIKVALSDTGIPKVNVSLSATTD
EEPEVNVSDEEFLQFDTSSVPVIVTLTKVGKHYIVDATSEEESQMSSAVSVSVNRHGQIR
GLTKRGGAGLDPSVIFDMISVAKHVSRQFISVLDSETLAAEAAE

Transcript Sequence

Transcript ID

Os12t0403800-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:12075143:12087665:1 gene:Os12g0403800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Exosome complex exonuclease RRP42. (Os12t0403800-01);Exoribonuclease domain containing protein. (Os12t0403800-02)
Sequence

GATATCCGTCCCCGTCTTTCCTTCCCCCGCCGCCGCCGCCGCCGCCTGCGCCGCTGCGCT
ATCTCCAACACTGCGAACAGCGGTGCCGGCGGCCTGCTCCTGCTACTTCCGCCGTATACT
CTCGCTTCTGACCCCTTGCGCTCAAGTCAATCTTCCCTTGCCCACGGCCTCGACTCGCGT
CTGCTCGCGAGTTCGCCCGCCGCCGCCTGCGCCGATCTCCATCCCGCGAGCAGCGGTGCC
GTCGTCTTGCTGCTTCGGCCTCCGGTACGCCCCCGCTGCTCCCCGCACCATGGTTGGGCT
TTCGGAAGGAGAGAAGCACTTCATCCGCGGGGGCATCGCGCAGGACCTCCGCACCGACGG
CCGCAGGCGGCTGCAGTTCCGGGCCATCTCGGTCGAGACCGGAGTCATACCTCAGGCAAA
CGGCTCTGCGCGTGTTAGACTCGGTGCGACTGAAGTCATAGCTACTGTAAAGGCTGAGTT
GGGGAAACCAAGCATTCTTCATCCTGATAAAGGGAAAGTTTCCATTTTTGTTGATTGCAG
CCCAACTGCAGCACCCATGTTTGAGGGTAGAGGTTCTGAAGAATTTTCTGCTGAGCTCTG
TGTTGCACTGCAAAGATGCTTACTCGGTGGTAAAAGTGGGGCAGGGGCTGCAATTGATTT
ATCCTCACTGATTGTCGTTGATGGAAAGGTCTGCTGGGATCTCTACATTGATGGACTTGT
TGTTAGTTCTGATGGAAATTTGCTTGATGCATTGGCTGCTGCAATAAAGGTGGCTTTGAG
TGATACAGGTATCCCAAAAGTCAATGTTTCTCTTAGTGCTACAACAGATGAGGAACCTGA
AGTTAATGTTAGTGATGAAGAATTTTTGCAATTTGACACCTCCAGTGTGCCTGTTATTGT
TACATTGACGAAGGTAGGTAAGCACTACATTGTGGATGCTACCTCAGAGGAAGAATCTCA
GATGAGCTCTGCGGTTTCAGTATCAGTTAATAGGCATGGTCAAATACGTGGATTGACTAA
GAGGGGCGGTGCAGGGTTGGATCCAAGTGTCATTTTTGATATGATATCTGTGGCTAAGCA
TGTAAGTCGACAATTCATCTCGGTATTGGATTCGGAGACATTAGCTGCTGAAGCGGCTGA
GTAGAGAGGAAGGAGAGCAGAGGTTTTGATTATTGACATGCCAAGTTTGCAATGCATCTA
CCGGTTTCAGTTTTGCTCACAAAGATGAATTGTTGTCTTCTGAAGCGTACAATCTTACTG
TAGCTTTATGCTGAAGTGAAAACGCATGGGATGCTGGCATGCTGCTGAAATGTATGCTTT
TTAATTTATTCATAGATGCATTTAACTTTTTTGAGATAAGATACGTTTAATTTGGTATGC
TTGCTAGAT