Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0297500-01
CDS Infomation	cds chromosome:IRGSP-1.0:12:11727437:11744407:-1 gene:Os12g0297500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GWD3 description:Pyruvate phosphate dikinase, PEP/pyruvate-binding domain containing protein. (Os12t0297500-01);Similar to Phosphoglucan, water dikinase, chloroplastic. (Os12t0297500-02)
Sequence	ATGACGTCGCTGCGGCCCCTCGAAACCTCGCTCTCCATAGGCGGCAGGCCGCGCCGTGGT CTCGTCCTCCCGCCGCCCGGAGTCGGTGCGGGTGTGCTGCTCCGCCGGGGAGCGATGGCG CTCCCTGGGCGGCGCGGCTTCGCGTGCCGCGGGAGATCCGCGGCCTCGGCGGCAGAGAGA ACAAAGGAGAAAAAGAGAAGAGATTCTTCAAAGCAGCCATTGGTGCATCTCCAGGTTTGT CTAGAGCACCAGGTTAAGTTTGGTGAGCATGTAGGCATTATCGGTTCCACAAAGGAGCTT GGTTCATGGGAGGAGCAGGTTGAACTGGAATGGACTACAAATGGTTGGGTCTGCCAGCTT AAGCTCCCTGGAGAAACACTTGTGGAGTTTAAATTTGTTATATTTTTGGTGGGAGGAAAA GATAAAATATGGGAAGATGGTAATAACCGTGTTGTTGAGCTGCCGAAGGATGGTAAGTTT GATATAGTATGCCACTGGAATAGAACAGAAGAGCCATTAGAACTTTTAGGAACACCAAAG TTTGAGTTGGTCGGAGAAGCTGAAAAGAATACTGGCGAGGATGCTTCAGCATCTGTAACT TTTGCACCTGAAAAAGTTCAAGATATTTCAGTTGTTGAGAATGGTGATCCAGCACCAGAG GCCGAGTCAAGCAAATTTGGTGGGCAATGGCAAGGAAGTAAAACTGTTTTCATGAGATCA AATGAGCATCTGAATAAGGAGGCTGATAGGATGTGGGATACAACTGGGCTTGATGGAATA GCACTGAAACTGGTGGAGGGCGATAAAGCATCCAGGAACTGGTGGCGGAAGTTAGAGGTT GTTCGCGGGATATTGTCAGAATCTTTTGATGACCAGAGTCGTCTGGGGGCCCTTGTATAC TCAGCTATTTATCTGAAGTGGATTTATACAGGTCAGATATCGTGCTTTGAAGATGGTGGC CACCATCGGCCTAACAAACATGCTGAGATATCGAGGCAAATATTCCGTGAACTTGAAATG ATGTATTATGGGAAAACCACATCAGCCAAGGATGTTCTCGTGATTCGCAAAATTCATCCC TTTTTACCTTCATTTAAGTCAGAGTTTACAGCCTCTGTCCCTCTAACACGAATTCGTGAT ATTGCTCACCGGAATGACATCCCACATGATCTCAAGCAAGAAATCAAGCATACTATACAA AACAAACTTCATCGTAATGCTGGACCTGAGGATCTTATTGCTACAGAAGTCATGCTTGCT AGGATTACTAAGACCCCTGGAGAATACAGTGAAACATTTGTTGAACAATTCACGATATTT TATAGCGAACTAAAAGATTTCTTCAATGCTGGCAGCCTATTTGAGCAACTGGAGTCCATC AAGGAATCTCTGAACGAGTCAGGCTTAGAAGTTCTCTCATCCTTTGTGGAAACCAAAAGG AGTTTGGACCAAGTGGATCATGCAGAAGATTTGGATAAAAATGATACCATTCAAATTTTG ATGACTACCTTGCAATCATTATCTTCTCTAAGATCGGTTCTAATGAAGGGCCTTGAAAGT GGCCTTAGAAATGATGCGCCTGATAATGCTATAGCAATGCGACAAAAGTGGCGCCTTTGT GAAATTAGTCTTGAGGATTATTCATTTGTTCTGTTAAGCAGATTCATCAATACTCTTGAA GCCTTAGGTGGATCAGCTTCACTTGCAAAGGATGTAGCTAGAAATACTACTCTATGGGAT ACTACTCTTGATGCCCTTGTCATTGGCATCAATCAAGTTAGCTTTTCAGGTTGGAAAACA GATGAATGTATTGCCATAGGGAATGAGATTCTTTCCTGGAAGCAAAAAGGTCTATCTGAA AGTGAAGGTTGTGAAGATGGGAAATATATTTGGTCACTAAGACTTAAAGCTACACTGGAC AGAGCACGGAGATTAACGGAAGAGTACTCTGAAGCACTTCTTTCTATATTCCCTGAAAAA GTAATGGTTATTGGGAAAGCCCTTGGAATACCAGATAACAGTGTGAGAACTTACACAGAG GCAGAAATTCGTGCTGGCATTGTTTTTCAGGTATCTAAACTATGCACAGTACTTCAGAAA GCAATTCGAGAAGTACTTGGATCAACTGGCTGGGATGTTCTTGTTCCTGGAGTGGCCCAT GGAACTCTGATGCGGGTGGAAAGAATTCTTCCTGGATCATTACCTTCATCTGTCAAAGAA CCTGTGGTTCTAATTGTAGATAAGGCTGATGGAGATGAAGAGGTCAAAGCTGCTGGGGAT AATATAGTTGGTGTTATTCTTCTTCAGGAACTACCTCACCTTTCACATCTTGGTGTTAGA GCTCGTCAAGAGAATGTTGTATTTGTAACTTGTGAATATGATGACACAGTTACAGATGTG TATTTGCTTGAGGGAAAATATATCAGATTAGAAGCATCATCCATCAATGTCAATCTCTCA ATAGTTTCAGAAAAAAATGACAATGCTGTCTCTACAGAACCAAATAGTACAGGGAATCCA TTTCAACAGAAACTCCAAAATGAATTCTCTCTACCATCGGATATCGAGATGCCACTGCAA ATGTCTAAGCAAAAAAGCAAATCAGGAGTGAATGGTAGTTTTGCTGCTCTTGAGCTTTCA GAAGCTTCAGTGGAATCAGCTGGTGCAAAAGCTGCTGCATGCAGAACTCTTTCTGTTCTT GCTTCATTGTCTAATAAAGTCTATAGTGATCAAGGAGTTCCAGCAGCCTTTAGAGTCCCT TCTGGTGCTGTGATACCATTTGGATCAATGGAGGATGCGCTCAAGAAAAGTGGATCACTG GAATCCTTTACAAGCCTTCTAGAAAAGATTGAAACAGCCAAAGTCGAAAATGGTGAAGTT GATAGCCTGGCGTTGGAGCTACAAGCAATAATTTCACATCTTTCCCCACCGGAGGAGACT ATTATATTTCTCAAAAGAATCTTCCCACAGGATGTCCGGTTGATTGTTAGATCTAGTGCT AATGTGGAGGATTTGGCTGGTATGTCAGCTGCTGGTCTCTATGATTCAATTCCCAATGTC AGTCTCATGGACCCATGTGCCTTTGGAGCTGCGGTTGGGAAGGTTTGGGCTTCTTTATAC ACAAGGAGAGCCATCCTAAGCCGTCGAGCCGCTGGTGTTTATCAGAGAGACGCGACAATG GCTGTTCTTGTCCAAGAAATACTGCAGCCAGATCTCTCCTTCGTGCTTCATACTGTTTGC CCCGCTGACCATGACCCCAAGGTTGTCCAGGCTGAGGTCGCCCCTGGGCTGGGTGAAACG CTTGCTTCAGGAACCCGTGGCACCCCGTGGAGGCTGTCATGTAACAAATTCGATGGAAAA GTTGCCACTCTTGCCTTTTCAAATTTCAGTGAGGAGATGGTGGTGCACAACTCTGGTCCT GCCAATGGAGAAGTAATTCGTCTTACTGTTGATTACAGCAAGAAGCCATTGTCGGTTGAT ACAACCTTTAGGAAGCAGTTTGGTCAGCGACTGGCTGCGATTGGCCAGTATCTGGAGCAG AAGTTCGGGAGTGCACAGGATGTGGAAGGTTGCCTGGTTGGGAAAGATATTTTTATAGTG CAAAGCAGGCCACAGCCATAG

Peptide Sequence

PEP ID	Os12t0297500-01
PEP Infomation	pep chromosome:IRGSP-1.0:12:11727437:11744407:-1 gene:Os12g0297500 transcript:Os12t0297500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GWD3 description:Pyruvate phosphate dikinase, PEP/pyruvate-binding domain containing protein. (Os12t0297500-01);Similar to Phosphoglucan, water dikinase, chloroplastic. (Os12t0297500-02)
Sequence	MTSLRPLETSLSIGGRPRRGLVLPPPGVGAGVLLRRGAMALPGRRGFACRGRSAASAAER TKEKKRRDSSKQPLVHLQVCLEHQVKFGEHVGIIGSTKELGSWEEQVELEWTTNGWVCQL KLPGETLVEFKFVIFLVGGKDKIWEDGNNRVVELPKDGKFDIVCHWNRTEEPLELLGTPK FELVGEAEKNTGEDASASVTFAPEKVQDISVVENGDPAPEAESSKFGGQWQGSKTVFMRS NEHLNKEADRMWDTTGLDGIALKLVEGDKASRNWWRKLEVVRGILSESFDDQSRLGALVY SAIYLKWIYTGQISCFEDGGHHRPNKHAEISRQIFRELEMMYYGKTTSAKDVLVIRKIHP FLPSFKSEFTASVPLTRIRDIAHRNDIPHDLKQEIKHTIQNKLHRNAGPEDLIATEVMLA RITKTPGEYSETFVEQFTIFYSELKDFFNAGSLFEQLESIKESLNESGLEVLSSFVETKR SLDQVDHAEDLDKNDTIQILMTTLQSLSSLRSVLMKGLESGLRNDAPDNAIAMRQKWRLC EISLEDYSFVLLSRFINTLEALGGSASLAKDVARNTTLWDTTLDALVIGINQVSFSGWKT DECIAIGNEILSWKQKGLSESEGCEDGKYIWSLRLKATLDRARRLTEEYSEALLSIFPEK VMVIGKALGIPDNSVRTYTEAEIRAGIVFQVSKLCTVLQKAIREVLGSTGWDVLVPGVAH GTLMRVERILPGSLPSSVKEPVVLIVDKADGDEEVKAAGDNIVGVILLQELPHLSHLGVR ARQENVVFVTCEYDDTVTDVYLLEGKYIRLEASSINVNLSIVSEKNDNAVSTEPNSTGNP FQQKLQNEFSLPSDIEMPLQMSKQKSKSGVNGSFAALELSEASVESAGAKAAACRTLSVL ASLSNKVYSDQGVPAAFRVPSGAVIPFGSMEDALKKSGSLESFTSLLEKIETAKVENGEV DSLALELQAIISHLSPPEETIIFLKRIFPQDVRLIVRSSANVEDLAGMSAAGLYDSIPNV SLMDPCAFGAAVGKVWASLYTRRAILSRRAAGVYQRDATMAVLVQEILQPDLSFVLHTVC PADHDPKVVQAEVAPGLGETLASGTRGTPWRLSCNKFDGKVATLAFSNFSEEMVVHNSGP ANGEVIRLTVDYSKKPLSVDTTFRKQFGQRLAAIGQYLEQKFGSAQDVEGCLVGKDIFIV QSRPQP

Transcript Sequence

Transcript ID	Os12t0297500-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:11727437:11744407:-1 gene:Os12g0297500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GWD3 description:Pyruvate phosphate dikinase, PEP/pyruvate-binding domain containing protein. (Os12t0297500-01);Similar to Phosphoglucan, water dikinase, chloroplastic. (Os12t0297500-02)
Sequence	GTGCCTTCTCGAACAAACCGACGCGGCGACGCCTTCCGGGAGCGACCGCCACCTGTTCGG CGGATTGCCGTTGAGGAGGATCAATGACGTCGCTGCGGCCCCTCGAAACCTCGCTCTCCA TAGGCGGCAGGCCGCGCCGTGGTCTCGTCCTCCCGCCGCCCGGAGTCGGTGCGGGTGTGC TGCTCCGCCGGGGAGCGATGGCGCTCCCTGGGCGGCGCGGCTTCGCGTGCCGCGGGAGAT CCGCGGCCTCGGCGGCAGAGAGAACAAAGGAGAAAAAGAGAAGAGATTCTTCAAAGCAGC CATTGGTGCATCTCCAGGTTTGTCTAGAGCACCAGGTTAAGTTTGGTGAGCATGTAGGCA TTATCGGTTCCACAAAGGAGCTTGGTTCATGGGAGGAGCAGGTTGAACTGGAATGGACTA CAAATGGTTGGGTCTGCCAGCTTAAGCTCCCTGGAGAAACACTTGTGGAGTTTAAATTTG TTATATTTTTGGTGGGAGGAAAAGATAAAATATGGGAAGATGGTAATAACCGTGTTGTTG AGCTGCCGAAGGATGGTAAGTTTGATATAGTATGCCACTGGAATAGAACAGAAGAGCCAT TAGAACTTTTAGGAACACCAAAGTTTGAGTTGGTCGGAGAAGCTGAAAAGAATACTGGCG AGGATGCTTCAGCATCTGTAACTTTTGCACCTGAAAAAGTTCAAGATATTTCAGTTGTTG AGAATGGTGATCCAGCACCAGAGGCCGAGTCAAGCAAATTTGGTGGGCAATGGCAAGGAA GTAAAACTGTTTTCATGAGATCAAATGAGCATCTGAATAAGGAGGCTGATAGGATGTGGG ATACAACTGGGCTTGATGGAATAGCACTGAAACTGGTGGAGGGCGATAAAGCATCCAGGA ACTGGTGGCGGAAGTTAGAGGTTGTTCGCGGGATATTGTCAGAATCTTTTGATGACCAGA GTCGTCTGGGGGCCCTTGTATACTCAGCTATTTATCTGAAGTGGATTTATACAGGTCAGA TATCGTGCTTTGAAGATGGTGGCCACCATCGGCCTAACAAACATGCTGAGATATCGAGGC AAATATTCCGTGAACTTGAAATGATGTATTATGGGAAAACCACATCAGCCAAGGATGTTC TCGTGATTCGCAAAATTCATCCCTTTTTACCTTCATTTAAGTCAGAGTTTACAGCCTCTG TCCCTCTAACACGAATTCGTGATATTGCTCACCGGAATGACATCCCACATGATCTCAAGC AAGAAATCAAGCATACTATACAAAACAAACTTCATCGTAATGCTGGACCTGAGGATCTTA TTGCTACAGAAGTCATGCTTGCTAGGATTACTAAGACCCCTGGAGAATACAGTGAAACAT TTGTTGAACAATTCACGATATTTTATAGCGAACTAAAAGATTTCTTCAATGCTGGCAGCC TATTTGAGCAACTGGAGTCCATCAAGGAATCTCTGAACGAGTCAGGCTTAGAAGTTCTCT CATCCTTTGTGGAAACCAAAAGGAGTTTGGACCAAGTGGATCATGCAGAAGATTTGGATA AAAATGATACCATTCAAATTTTGATGACTACCTTGCAATCATTATCTTCTCTAAGATCGG TTCTAATGAAGGGCCTTGAAAGTGGCCTTAGAAATGATGCGCCTGATAATGCTATAGCAA TGCGACAAAAGTGGCGCCTTTGTGAAATTAGTCTTGAGGATTATTCATTTGTTCTGTTAA GCAGATTCATCAATACTCTTGAAGCCTTAGGTGGATCAGCTTCACTTGCAAAGGATGTAG CTAGAAATACTACTCTATGGGATACTACTCTTGATGCCCTTGTCATTGGCATCAATCAAG TTAGCTTTTCAGGTTGGAAAACAGATGAATGTATTGCCATAGGGAATGAGATTCTTTCCT GGAAGCAAAAAGGTCTATCTGAAAGTGAAGGTTGTGAAGATGGGAAATATATTTGGTCAC TAAGACTTAAAGCTACACTGGACAGAGCACGGAGATTAACGGAAGAGTACTCTGAAGCAC TTCTTTCTATATTCCCTGAAAAAGTAATGGTTATTGGGAAAGCCCTTGGAATACCAGATA ACAGTGTGAGAACTTACACAGAGGCAGAAATTCGTGCTGGCATTGTTTTTCAGGTATCTA AACTATGCACAGTACTTCAGAAAGCAATTCGAGAAGTACTTGGATCAACTGGCTGGGATG TTCTTGTTCCTGGAGTGGCCCATGGAACTCTGATGCGGGTGGAAAGAATTCTTCCTGGAT CATTACCTTCATCTGTCAAAGAACCTGTGGTTCTAATTGTAGATAAGGCTGATGGAGATG AAGAGGTCAAAGCTGCTGGGGATAATATAGTTGGTGTTATTCTTCTTCAGGAACTACCTC ACCTTTCACATCTTGGTGTTAGAGCTCGTCAAGAGAATGTTGTATTTGTAACTTGTGAAT ATGATGACACAGTTACAGATGTGTATTTGCTTGAGGGAAAATATATCAGATTAGAAGCAT CATCCATCAATGTCAATCTCTCAATAGTTTCAGAAAAAAATGACAATGCTGTCTCTACAG AACCAAATAGTACAGGGAATCCATTTCAACAGAAACTCCAAAATGAATTCTCTCTACCAT CGGATATCGAGATGCCACTGCAAATGTCTAAGCAAAAAAGCAAATCAGGAGTGAATGGTA GTTTTGCTGCTCTTGAGCTTTCAGAAGCTTCAGTGGAATCAGCTGGTGCAAAAGCTGCTG CATGCAGAACTCTTTCTGTTCTTGCTTCATTGTCTAATAAAGTCTATAGTGATCAAGGAG TTCCAGCAGCCTTTAGAGTCCCTTCTGGTGCTGTGATACCATTTGGATCAATGGAGGATG CGCTCAAGAAAAGTGGATCACTGGAATCCTTTACAAGCCTTCTAGAAAAGATTGAAACAG CCAAAGTCGAAAATGGTGAAGTTGATAGCCTGGCGTTGGAGCTACAAGCAATAATTTCAC ATCTTTCCCCACCGGAGGAGACTATTATATTTCTCAAAAGAATCTTCCCACAGGATGTCC GGTTGATTGTTAGATCTAGTGCTAATGTGGAGGATTTGGCTGGTATGTCAGCTGCTGGTC TCTATGATTCAATTCCCAATGTCAGTCTCATGGACCCATGTGCCTTTGGAGCTGCGGTTG GGAAGGTTTGGGCTTCTTTATACACAAGGAGAGCCATCCTAAGCCGTCGAGCCGCTGGTG TTTATCAGAGAGACGCGACAATGGCTGTTCTTGTCCAAGAAATACTGCAGCCAGATCTCT CCTTCGTGCTTCATACTGTTTGCCCCGCTGACCATGACCCCAAGGTTGTCCAGGCTGAGG TCGCCCCTGGGCTGGGTGAAACGCTTGCTTCAGGAACCCGTGGCACCCCGTGGAGGCTGT CATGTAACAAATTCGATGGAAAAGTTGCCACTCTTGCCTTTTCAAATTTCAGTGAGGAGA TGGTGGTGCACAACTCTGGTCCTGCCAATGGAGAAGTAATTCGTCTTACTGTTGATTACA GCAAGAAGCCATTGTCGGTTGATACAACCTTTAGGAAGCAGTTTGGTCAGCGACTGGCTG CGATTGGCCAGTATCTGGAGCAGAAGTTCGGGAGTGCACAGGATGTGGAAGGTTGCCTGG TTGGGAAAGATATTTTTATAGTGCAAAGCAGGCCACAGCCATAGCATGGATGTGCGCCAA TATCAGTATGGTTAGGTAAATAAAGTTTGCCGCATGGATCGACTGTTGTAATGCGAATAG CCTTCACGCAAAACTCGAAGGGTTGTCATTAGTGTTTCTTTACTATTTTTTTTGGAAGCA AGGGGAAAAAATAATGCCTAAATTCTAAAGGAAATAGAAGTTTAAGGCCTAACTAATTCA AATCTTTCATGCCATGGCCTGAGAATGCTAATATTAGCACAAATCGTATGGAAATGTAAC TAGTATTCAAACAACTAGATCTCGTACGGCTTGTTGGAAAATCCGTTGTAATTGATGTAG AATTTGGCATAACATGTAATAACTACAATGCGATGTTTGTTACTGT