Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0291400-01
CDS Infomation	cds chromosome:IRGSP-1.0:12:11277247:11278306:1 gene:Os12g0291400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RuBisCO small subunit 5, Ribulose-1, 5-Bisphosphate Carboxylase/Oxygenase Small Subunit 5 description:Similar to Petunia ribulose 1,5-bisphosphate carboxylase small subunit mRNA (clone pSSU 51), partial cds. (Fragment). (Os12t0291400-01)
Sequence	ATGGCGCCCACCGTGATGGCCTCGTCGGCCACCTCCGTTGCTCCCTTCCAGGGGCTCAAA TCCACCGCCGGGCTCCCCGTCAGCCGCCGCTCCAACAGCGCCGGCCTCGGCAGCGTCAGC AACGGTGGAAGGATCAGCTGTATGCAGGTGTGGCCGATTGAAGGCATCAAGAAGTTTGAG ACCCTGTCGTACCTGCCACCGCTCACGGTCGAGGACCTCTTGAAGCAGATCGAGTACCTG CTCCGGTCCAAATGGGTGCCTTGCCTCGAGTTTAGTAAGGTCGGGTTCGTCTACCGTGAG AACCACAGGTCTCCTGGGTACTATGATGGCAGGTACTGGACCATGTGGAAGCTGCCTATG TTCGGATGCACTGATGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCATAT CCAGATGCATTTGTTCGCATCATCGGCTTCGACAACGTCAGGCAGGTGCAGTTGATTAGC TTCATCGCCTACAAGCCCCCGGGTTGCGAGGAGTCCGGCGGAAACTAA

Peptide Sequence

PEP ID	Os12t0291400-01
PEP Infomation	pep chromosome:IRGSP-1.0:12:11277247:11278306:1 gene:Os12g0291400 transcript:Os12t0291400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RuBisCO small subunit 5, Ribulose-1, 5-Bisphosphate Carboxylase/Oxygenase Small Subunit 5 description:Similar to Petunia ribulose 1,5-bisphosphate carboxylase small subunit mRNA (clone pSSU 51), partial cds. (Fragment). (Os12t0291400-01)
Sequence	MAPTVMASSATSVAPFQGLKSTAGLPVSRRSNSAGLGSVSNGGRISCMQVWPIEGIKKFE TLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGYYDGRYWTMWKLPM FGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPGCEESGGN

Transcript Sequence

Transcript ID	Os12t0291400-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:11277247:11278306:1 gene:Os12g0291400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RuBisCO small subunit 5, Ribulose-1, 5-Bisphosphate Carboxylase/Oxygenase Small Subunit 5 description:Similar to Petunia ribulose 1,5-bisphosphate carboxylase small subunit mRNA (clone pSSU 51), partial cds. (Fragment). (Os12t0291400-01)
Sequence	AAGCCACTGCTGCAGCGTGACTCTGCTCTAGCACCTCACCAAGCAGAAAGCTAGAGAGCT AGCAATGGCGCCCACCGTGATGGCCTCGTCGGCCACCTCCGTTGCTCCCTTCCAGGGGCT CAAATCCACCGCCGGGCTCCCCGTCAGCCGCCGCTCCAACAGCGCCGGCCTCGGCAGCGT CAGCAACGGTGGAAGGATCAGCTGTATGCAGGTGTGGCCGATTGAAGGCATCAAGAAGTT TGAGACCCTGTCGTACCTGCCACCGCTCACGGTCGAGGACCTCTTGAAGCAGATCGAGTA CCTGCTCCGGTCCAAATGGGTGCCTTGCCTCGAGTTTAGTAAGGTCGGGTTCGTCTACCG TGAGAACCACAGGTCTCCTGGGTACTATGATGGCAGGTACTGGACCATGTGGAAGCTGCC TATGTTCGGATGCACTGATGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGC ATATCCAGATGCATTTGTTCGCATCATCGGCTTCGACAACGTCAGGCAGGTGCAGTTGAT TAGCTTCATCGCCTACAAGCCCCCGGGTTGCGAGGAGTCCGGCGGAAACTAAGCTAGTTG GCAAGCCAGCAAGCTCACTCGTGAGCTCTATACAGAGGAGACTCGATTGATCTATTCGGT TTTGGCAGCTTTGAACGTTCGAATCGGGCCACCTTGCATTGGTTTCCCCTTTCCCAGTTT GTTGCTTCAGTTTTTTTTTTTCATCTTGTTTGTGTCAACATCAGCTGTGTATGTATGTAC ATATGTATGTATCAACATAGGTTGAAGAGCATGCATATGTGAATGCTAGCACCAGGCTAA TCATATGCACATACACATCGTAATAAATATATTGTACAAATCGTCAAAAACGATACTTAT ATGTAATACTATACTCAGACCAAACTTGATACCTCTGGTTTCC