Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0288900-00
CDS Infomation

cds chromosome:IRGSP-1.0:12:11081520:11083634:-1 gene:Os12g0288900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H0525D09.10 protein. (Os12t0288900-00)
Sequence

ATGTCTGGGATGGACGGCAGCGGTGTGCCAGAAACCGCCGGAGTGGAGGCAGCCTCCAGC
TCAGATGCCCGCGGGGACAACCGACACATGCCGTCTGAGGACTGTGTCGCCGGCATCAAC
TCGGCTCTCCAACGTATGAGCGTGTCAAAATTTCCTTATTTGCGTTGTGAACCAGATCCG
ACGGTGCGGTTCCTGAGGGAGCAAATGGAGAAGGCCGGTTGCCCAGTGCTACCGCGGATG
ATCAGGGCGATGAACTGCATGTCTACCAATCACAATGGTTCCTACGGTAGCGGGCTGGGG
ATAACTGTGTGCTGTGATCACATGCGGTCTCAAGATGAGATAAATCAGCTATTAATTCAT
GAATTAATACATGCCTATGATGACTGTGTTGTCAAGAACATGGATTGGAAGAACTGTGCT
CACCATGCTTGCTCTGAGATTCGAGCTAATCACCTTAGTGGTGACTGCCATTATAAACGT
GAATTGTTGCGTGGCTTCATGAAGATAAGGGGGCACGAGCAAGAATGTGTTAAAAGGCGG
GCTCTCATGTCTGTCAAGAACAACCCGTACTGCTCAGGGACAGCTGCAAAAGATGCAGTT
GAGTCTGTGTGGGATATATGCTACAATGATACACGCCCATTTGATAGGGTTCCATGA

Peptide Sequence

PEP ID

Os12t0288900-00
PEP Infomation

pep chromosome:IRGSP-1.0:12:11081520:11083634:-1 gene:Os12g0288900 transcript:Os12t0288900-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H0525D09.10 protein. (Os12t0288900-00)
Sequence

MSGMDGSGVPETAGVEAASSSDARGDNRHMPSEDCVAGINSALQRMSVSKFPYLRCEPDP
TVRFLREQMEKAGCPVLPRMIRAMNCMSTNHNGSYGSGLGITVCCDHMRSQDEINQLLIH
ELIHAYDDCVVKNMDWKNCAHHACSEIRANHLSGDCHYKRELLRGFMKIRGHEQECVKRR
ALMSVKNNPYCSGTAAKDAVESVWDICYNDTRPFDRVP

Transcript Sequence

Transcript ID

Os12t0288900-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:11081520:11083634:-1 gene:Os12g0288900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H0525D09.10 protein. (Os12t0288900-00)
Sequence

ATGTCTGGGATGGACGGCAGCGGTGTGCCAGAAACCGCCGGAGTGGAGGCAGCCTCCAGC
TCAGATGCCCGCGGGGACAACCGACACATGCCGTCTGAGGACTGTGTCGCCGGCATCAAC
TCGGCTCTCCAACGTATGAGCGTGTCAAAATTTCCTTATTTGCGTTGTGAACCAGATCCG
ACGGTGCGGTTCCTGAGGGAGCAAATGGAGAAGGCCGGTTGCCCAGTGCTACCGCGGATG
ATCAGGGCGATGAACTGCATGTCTACCAATCACAATGGTTCCTACGGTAGCGGGCTGGGG
ATAACTGTGTGCTGTGATCACATGCGGTCTCAAGATGAGATAAATCAGCTATTAATTCAT
GAATTAATACATGCCTATGATGACTGTGTTGTCAAGAACATGGATTGGAAGAACTGTGCT
CACCATGCTTGCTCTGAGATTCGAGCTAATCACCTTAGTGGTGACTGCCATTATAAACGT
GAATTGTTGCGTGGCTTCATGAAGATAAGGGGGCACGAGCAAGAATGTGTTAAAAGGCGG
GCTCTCATGTCTGTCAAGAACAACCCGTACTGCTCAGGGACAGCTGCAAAAGATGCAGTT
GAGTCTGTGTGGGATATATGCTACAATGATACACGCCCATTTGATAGGGTTCCATGA