Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0283400-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:10732280:10733415:1 gene:Os12g0283400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectinesterase inhibitor domain containing protein. (Os12t0283400-01)
Sequence

ATGGCATCAATGGCGCCATCGGCAATGGTGCTCATCGTCCTCCTCGTCCTGGTGGTTCTC
CCGTCGAGCACTCTGTGCTCACGGGCGGGGCCTTCTTCCAAGCACGGCCATGGCGGTGGC
CACGCCAAGCGCGTGCCGCCACCGGCGTCGGTACCGCCGCCGCCGCCGCCGCCACCAGCG
CCGGCGGCGCTGGTGCGTGCCACCTGCAACTCCACCTCCTACTACGACCTCTGCGTCGCC
GAGCTGTCCGCCGACCCGTCGAGCGCCACGGCCGACGTGCGCGGACTGTCGTCCATCGCC
GTCTCCGCCGCCGCCGCCAACGCATCCGGGGCGGCGCAGGCGGCCTCGGCGCTGGCGAAC
GCGACCGACGCGGGGACGACGGCGGGCGTCGCCGGCGACGGCGGCGGCGCAGTCGTACAG
AGGCTGCTCGCCACCTGCGCGGCCAAGTACGGCGACGCCCGCGACGCGCTCGCCGCGGCC
AAGGGCTCGATCGCGCAGCAGGACTACGACATGGCGTCCGTGCACGTCAGCGCCGCCGCG
GAGTACCCGCAGGTGTGCAGGACGCTGTTCGGGCGGCAGAGCCCCGGAGACTACCCGCCG
GAGCTCGCCGCGACAGAGGTGGCGCTCAGGCAGCTCTGCTCCGTCGCGCTCGACATCATC
GCGCTCCTCAGCTCATCCAGCAACTAG

Peptide Sequence

PEP ID

Os12t0283400-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:10732280:10733415:1 gene:Os12g0283400 transcript:Os12t0283400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectinesterase inhibitor domain containing protein. (Os12t0283400-01)
Sequence

MASMAPSAMVLIVLLVLVVLPSSTLCSRAGPSSKHGHGGGHAKRVPPPASVPPPPPPPPA
PAALVRATCNSTSYYDLCVAELSADPSSATADVRGLSSIAVSAAAANASGAAQAASALAN
ATDAGTTAGVAGDGGGAVVQRLLATCAAKYGDARDALAAAKGSIAQQDYDMASVHVSAAA
EYPQVCRTLFGRQSPGDYPPELAATEVALRQLCSVALDIIALLSSSSN

Transcript Sequence

Transcript ID

Os12t0283400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:10732280:10733415:1 gene:Os12g0283400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectinesterase inhibitor domain containing protein. (Os12t0283400-01)
Sequence

AAGAAGCTAATTAACCCAAGCAACTAGCTATCTAGCTTAGCCTCGCTAAACCAACACCAT
CGTAAAAATCTCTTTGATAGTTGACATCGAGGCAGTGATTAATTAAGTAGCTAGCTAGTT
ACAGGCACAAGGAGAGAAACACCAATGGCATCAATGGCGCCATCGGCAATGGTGCTCATC
GTCCTCCTCGTCCTGGTGGTTCTCCCGTCGAGCACTCTGTGCTCACGGGCGGGGCCTTCT
TCCAAGCACGGCCATGGCGGTGGCCACGCCAAGCGCGTGCCGCCACCGGCGTCGGTACCG
CCGCCGCCGCCGCCGCCACCAGCGCCGGCGGCGCTGGTGCGTGCCACCTGCAACTCCACC
TCCTACTACGACCTCTGCGTCGCCGAGCTGTCCGCCGACCCGTCGAGCGCCACGGCCGAC
GTGCGCGGACTGTCGTCCATCGCCGTCTCCGCCGCCGCCGCCAACGCATCCGGGGCGGCG
CAGGCGGCCTCGGCGCTGGCGAACGCGACCGACGCGGGGACGACGGCGGGCGTCGCCGGC
GACGGCGGCGGCGCAGTCGTACAGAGGCTGCTCGCCACCTGCGCGGCCAAGTACGGCGAC
GCCCGCGACGCGCTCGCCGCGGCCAAGGGCTCGATCGCGCAGCAGGACTACGACATGGCG
TCCGTGCACGTCAGCGCCGCCGCGGAGTACCCGCAGGTGTGCAGGACGCTGTTCGGGCGG
CAGAGCCCCGGAGACTACCCGCCGGAGCTCGCCGCGACAGAGGTGGCGCTCAGGCAGCTC
TGCTCCGTCGCGCTCGACATCATCGCGCTCCTCAGCTCATCCAGCAACTAGCAGCTCTGC
TTGTTACCGAGCTCAAGTTCACCCAACCAGCTAACTACTCGCAATTCGTATAGGTACAAA
TGGTGCAAATATAGTACTGTATAATACTACTGCATAGAATACATATACGTGTAATGACAC
GTATTTATCTTTTTTTTTTGCAAGGGGCACGTATATCAATTAATTGTGTGTCCCAATTAA
TTAGAGTCGAATCCACTTGATATGTTCTTTTGTTAATTTGTATTATCACTCCATAGAGGA
GTTGCTGTAGTAGTGCAAAAGGTACATGCGGCCGCCGGCAGTATGCATGTATTTCA