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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0278700-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:10420150:10425828:-1 gene:Os12g0278700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to cystinosin. (Os12t0278700-01);Similar to Cystinosin homolog. (Os12t0278700-02)
Sequence

ATGTCGTCGTGGAACTCGGTGGGGATGGAGGTGCTGTACCAGGTGCTCGGGTGGGTCGCC
TTCTTCGCTTGGTCCTTCAGCTTCTACCCGCAGGTCTTCCTCAACTTCAAGCGCAAGAGT
GTGGTGGGTCTGAACTTTGATTTTCTGGTGTTGAACTTGACAAAGCACTCATCCTACCTC
ATATACAATGCTGCTCTATTCTTCAGCCCCTTCATCCAGAGACAGTATCATGAGACATAT
GGTGATAAAGAGATGATTCCTGTCGCGGCAAATGATGTTGCCTTTTCTGTACACGCGGTT
GCCTTGACAGCTTTTACCCTTTTTCAAGTATTCATCTACGAGCGAGGAAACCAGAAAATC
TCCAAAGTCTGCATATCAATCACTGCTATTGTGTGGACAGCTGCTATTGTTTGCCTTATT
GTAGCTTGGCCAAAAAGTAACTGGCTCTGGCTTATAGATGTGTTCAATTCAATACAGGTT
GGGATGACAGCAATCAAATACATTCCTCAGGCCATCATGAACTTCAGGAGGAAGAGTACA
ATTGGTTGGAGTATTGGCAATATTTTACTTGATCTTACAGGAGGGGTGCTAAACTTTGGC
CAGATGGGTGTGCAATCAATAGATCAACACACGCTAGTGAACTTCTATGGAAATATTGGG
AAAACCCTTCTTTCATTGGAAGTCGTTTTCTTCGACATCTTATTCATAATCCAACACTAT
GTGCTGTACCCTGTCAAACGAGATGAGAATGGTAAGGCTATCATTTCTGAAAGGGTAGCT
CCTCTTATCAGGCCTTCAGACAAGCCTGAAGAAGATAGTGTGTGA

Peptide Sequence

PEP ID

Os12t0278700-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:10420150:10425828:-1 gene:Os12g0278700 transcript:Os12t0278700-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to cystinosin. (Os12t0278700-01);Similar to Cystinosin homolog. (Os12t0278700-02)
Sequence

MSSWNSVGMEVLYQVLGWVAFFAWSFSFYPQVFLNFKRKSVVGLNFDFLVLNLTKHSSYL
IYNAALFFSPFIQRQYHETYGDKEMIPVAANDVAFSVHAVALTAFTLFQVFIYERGNQKI
SKVCISITAIVWTAAIVCLIVAWPKSNWLWLIDVFNSIQVGMTAIKYIPQAIMNFRRKST
IGWSIGNILLDLTGGVLNFGQMGVQSIDQHTLVNFYGNIGKTLLSLEVVFFDILFIIQHY
VLYPVKRDENGKAIISERVAPLIRPSDKPEEDSV

Transcript Sequence

Transcript ID

Os12t0278700-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:10420150:10425828:-1 gene:Os12g0278700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to cystinosin. (Os12t0278700-01);Similar to Cystinosin homolog. (Os12t0278700-02)
Sequence

TCCATCCTCTGCTGCACTGGCACGAACGTCGCCGGGATCCCGACCCGGTTCGTCCCTCCC
AAGCCCCAACCCGAGGAGCAAAGCCGGGGCATGGCAGAACCGTGAATAAGCCGCAACCTC
TGTGGCGGTTTCCGACCAATCCCCTTCTTCTCCACCCAACCAGGTGAGAAATGCGATTGG
GCGATGGCTTCGCTTTCCTCGCGCTATAAATTCCGCGGGCAACAATAAAGAATTGGAGCG
GAGCAGCAAGTGGTGGGAGGGAGAATCCGGAATCCCAAAGCAACAGCAGCTAGGGTGAAG
GGAGGGAGGGAGGGGGAGAGGGAGAACCGCGGCGATGTCGTCGTGGAACTCGGTGGGGAT
GGAGGTGCTGTACCAGGTGCTCGGGTGGGTCGCCTTCTTCGCTTGGTCCTTCAGCTTCTA
CCCGCAGGTCTTCCTCAACTTCAAGCGCAAGAGTGTGGTGGGTCTGAACTTTGATTTTCT
GGTGTTGAACTTGACAAAGCACTCATCCTACCTCATATACAATGCTGCTCTATTCTTCAG
CCCCTTCATCCAGAGACAGTATCATGAGACATATGGTGATAAAGAGATGATTCCTGTCGC
GGCAAATGATGTTGCCTTTTCTGTACACGCGGTTGCCTTGACAGCTTTTACCCTTTTTCA
AGTATTCATCTACGAGCGAGGAAACCAGAAAATCTCCAAAGTCTGCATATCAATCACTGC
TATTGTGTGGACAGCTGCTATTGTTTGCCTTATTGTAGCTTGGCCAAAAAGTAACTGGCT
CTGGCTTATAGATGTGTTCAATTCAATACAGGTTGGGATGACAGCAATCAAATACATTCC
TCAGGCCATCATGAACTTCAGGAGGAAGAGTACAATTGGTTGGAGTATTGGCAATATTTT
ACTTGATCTTACAGGAGGGGTGCTAAACTTTGGCCAGATGGGTGTGCAATCAATAGATCA
ACACACGCTAGTGAACTTCTATGGAAATATTGGGAAAACCCTTCTTTCATTGGAAGTCGT
TTTCTTCGACATCTTATTCATAATCCAACACTATGTGCTGTACCCTGTCAAACGAGATGA
GAATGGTAAGGCTATCATTTCTGAAAGGGTAGCTCCTCTTATCAGGCCTTCAGACAAGCC
TGAAGAAGATAGTGTGTGATATACCTATTGTATTTCACCTTTTTTATGGCCCTGATTACA
TTCGCTTCAGGGTATAGTCCCAACTATCCATTCATATGAAACAAATGCATTTTTCGTAAA
ACTAAATTTTGTACATATTTGTTTACGGATTAATGTAAAGATGTAGATACAATAGGCCTT
TGATACTAGTCTTAAAACAATGTTTGTGATTATGTAAGTGTAAGTATACTT