Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0277500-01
CDS Infomation	cds chromosome:IRGSP-1.0:12:10293602:10297901:1 gene:Os12g0277500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:chaperonin 60 alpha subunit 1 description:Plastid chaperonin 60 alpha subunit, Folding of Rubisco large subunit (rbcL), Seedling development (Os12t0277500-01);Similar to RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment). (Os12t0277500-02);Similar to RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment). (Os12t0277500-03);Similar to RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment). (Os12t0277500-04)
Sequence	ATGGCGTCCGCCAACGCCATCTCCACCGCCTCCCTCCTCCGCTCTTTCTCCTCCCAGGGG AGGGTGAGGAGGGCCAAGAATGGGCGGGCGCAGCGGCTAGTGGTGCGGGCGGACGCCAAG GACATCGCCTTCGACCAGAAATCCCGGGCGGCGCTCCAGGCCGGCGTCGAGAAGCTCGCC AACGCCGTTGGCGTCACCCTCGGCCCACGAGGGAGAAACGTAGTGCTTGATGAGTACGGC AGTCCCAAAGTGGTAAATGATGGAGTCACCATTGCCCGGGCTATTGAGCTATATGATCCG ATGGAAAATGCTGGTGCAGCATTGATCCGTGAGGTTGCTAGCAAGACCAATGATTCTGCT GGTGATGGGACTACAACCGCCTCTGTCCTTGCTCGTGAAATCATCAAGCTGGGCCTTTTG AGTGTAACTTCTGGTGCAAACCCTGTATCACTTAAGAAAGGAATAGACAAAACAGTGCAT GGTCTTATTGAAGAGCTGGAGAAGAAGGCTAGACCAGTCAAGGGCAGTGGTGATATCAAA GCTGTTGCCTCTATCTCTGCTGGCAACGATGAACTTATTGGATCTATGATTGCTGATGCT ATTGACAAAGTGGGTCCTGATGGTGTCCTTTCAATTGAGTCTTCATCATCTTTCGAGACT ACTGTTGATGTTGAAGAAGGAATGGAGATTGACCGTGGATACATTTCCCCTCAATTTGTG ACAAACCTCGAGAAATCGATCGTAGAGTTTGAGAATGCTAAGGTTCTTATTACTGATCAG AAGATCACCAGCATAAAGGAGATTCTTCCAATCTTGGAGAAGACAACACAGTTGAGAGCT CCACTGTTTATTATTGCTGAGGACATTACTGGCGAAGCTTTGGCAACCCTTGTTGTTAAT AAGCTCCGAGGAATTCTCAATGTTGCAGCAATCAAAGCCCCAAGTTTTGGTGAGCGACGC AAGGCTGTCCTTCAGGATATTGCCATTGTGACAGGCGCTGAATTTCTAGCAAAAGACCTG GGTTTGCTGGTTGAGAATGCAACTGAAGAGCAACTTGGGACAGCGAGAAAAGTCACAATA CATCAGACTACAACAACCCTCATAGCGGATGCAGCTAGCAAAGATGAGATTCAGGCAAGG GTTGCACAGCTAAAGAAGGAACTCTCCGAAACTGATTCGATATATGATACAGAGAAATTG GCTGAGAGGATTGCAAAGCTTTCTGGTGGTGTGGCTGTCATCAAGGTTGGGGCTGCAACT GAGACTGAGCTTGAGGACCGCCAACTACGTATCGAGGATGCGAAGAATGCAACTTTCGCA GCTATTGAGGAGGGCATTGTTCCTGGAGGTGGTACAGCGTATGTGCATCTTTCAACTACC GTCCCTGCGATCAAAGAAACAATCGAAGACCATGATGAGCGCCTTGGTGCAGACATTATT CAAAAGGCGTTGGTAGCTCCCGCTTCACTGATTGCCCACAATGCTGGAGTGGAAGGGGAA GTGGTAGTTGAGAAGATCAAGGACGGCGAGTGGGAAGTCGGGTACAATGCGATGAACGAC AAGTATGAGAACTTGATTGAGGCGGGTGTTATTGACCCAGCTAAGGTGACGAGATGCGCG CTCCAGAATGCCGCCTCGGTGGCTGGAATGGTCCTTACCACACAGGCCATTGTTGTCGAG AAGCCGAAGCCCAAGGCTCCTGTTGCTGAGCCGGCAGAGGGAACCCTTACCGTCTAA

Peptide Sequence

PEP ID	Os12t0277500-01
PEP Infomation	pep chromosome:IRGSP-1.0:12:10293602:10297901:1 gene:Os12g0277500 transcript:Os12t0277500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:chaperonin 60 alpha subunit 1 description:Plastid chaperonin 60 alpha subunit, Folding of Rubisco large subunit (rbcL), Seedling development (Os12t0277500-01);Similar to RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment). (Os12t0277500-02);Similar to RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment). (Os12t0277500-03);Similar to RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment). (Os12t0277500-04)
Sequence	MASANAISTASLLRSFSSQGRVRRAKNGRAQRLVVRADAKDIAFDQKSRAALQAGVEKLA NAVGVTLGPRGRNVVLDEYGSPKVVNDGVTIARAIELYDPMENAGAALIREVASKTNDSA GDGTTTASVLAREIIKLGLLSVTSGANPVSLKKGIDKTVHGLIEELEKKARPVKGSGDIK AVASISAGNDELIGSMIADAIDKVGPDGVLSIESSSSFETTVDVEEGMEIDRGYISPQFV TNLEKSIVEFENAKVLITDQKITSIKEILPILEKTTQLRAPLFIIAEDITGEALATLVVN KLRGILNVAAIKAPSFGERRKAVLQDIAIVTGAEFLAKDLGLLVENATEEQLGTARKVTI HQTTTTLIADAASKDEIQARVAQLKKELSETDSIYDTEKLAERIAKLSGGVAVIKVGAAT ETELEDRQLRIEDAKNATFAAIEEGIVPGGGTAYVHLSTTVPAIKETIEDHDERLGADII QKALVAPASLIAHNAGVEGEVVVEKIKDGEWEVGYNAMNDKYENLIEAGVIDPAKVTRCA LQNAASVAGMVLTTQAIVVEKPKPKAPVAEPAEGTLTV

Transcript Sequence

Transcript ID	Os12t0277500-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:10293602:10297901:1 gene:Os12g0277500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:chaperonin 60 alpha subunit 1 description:Plastid chaperonin 60 alpha subunit, Folding of Rubisco large subunit (rbcL), Seedling development (Os12t0277500-01);Similar to RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment). (Os12t0277500-02);Similar to RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment). (Os12t0277500-03);Similar to RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment). (Os12t0277500-04)
Sequence	ACTCTTCCGCCCCCAAATCCTCCTGCTCACCTCACCTTATCCTCAGCTCTCAGCACCTCT TCCTCCCTCCCCCAAGCTTCCCTCTAATGGCGTCCGCCAACGCCATCTCCACCGCCTCCC TCCTCCGCTCTTTCTCCTCCCAGGGGAGGGTGAGGAGGGCCAAGAATGGGCGGGCGCAGC GGCTAGTGGTGCGGGCGGACGCCAAGGACATCGCCTTCGACCAGAAATCCCGGGCGGCGC TCCAGGCCGGCGTCGAGAAGCTCGCCAACGCCGTTGGCGTCACCCTCGGCCCACGAGGGA GAAACGTAGTGCTTGATGAGTACGGCAGTCCCAAAGTGGTAAATGATGGAGTCACCATTG CCCGGGCTATTGAGCTATATGATCCGATGGAAAATGCTGGTGCAGCATTGATCCGTGAGG TTGCTAGCAAGACCAATGATTCTGCTGGTGATGGGACTACAACCGCCTCTGTCCTTGCTC GTGAAATCATCAAGCTGGGCCTTTTGAGTGTAACTTCTGGTGCAAACCCTGTATCACTTA AGAAAGGAATAGACAAAACAGTGCATGGTCTTATTGAAGAGCTGGAGAAGAAGGCTAGAC CAGTCAAGGGCAGTGGTGATATCAAAGCTGTTGCCTCTATCTCTGCTGGCAACGATGAAC TTATTGGATCTATGATTGCTGATGCTATTGACAAAGTGGGTCCTGATGGTGTCCTTTCAA TTGAGTCTTCATCATCTTTCGAGACTACTGTTGATGTTGAAGAAGGAATGGAGATTGACC GTGGATACATTTCCCCTCAATTTGTGACAAACCTCGAGAAATCGATCGTAGAGTTTGAGA ATGCTAAGGTTCTTATTACTGATCAGAAGATCACCAGCATAAAGGAGATTCTTCCAATCT TGGAGAAGACAACACAGTTGAGAGCTCCACTGTTTATTATTGCTGAGGACATTACTGGCG AAGCTTTGGCAACCCTTGTTGTTAATAAGCTCCGAGGAATTCTCAATGTTGCAGCAATCA AAGCCCCAAGTTTTGGTGAGCGACGCAAGGCTGTCCTTCAGGATATTGCCATTGTGACAG GCGCTGAATTTCTAGCAAAAGACCTGGGTTTGCTGGTTGAGAATGCAACTGAAGAGCAAC TTGGGACAGCGAGAAAAGTCACAATACATCAGACTACAACAACCCTCATAGCGGATGCAG CTAGCAAAGATGAGATTCAGGCAAGGGTTGCACAGCTAAAGAAGGAACTCTCCGAAACTG ATTCGATATATGATACAGAGAAATTGGCTGAGAGGATTGCAAAGCTTTCTGGTGGTGTGG CTGTCATCAAGGTTGGGGCTGCAACTGAGACTGAGCTTGAGGACCGCCAACTACGTATCG AGGATGCGAAGAATGCAACTTTCGCAGCTATTGAGGAGGGCATTGTTCCTGGAGGTGGTA CAGCGTATGTGCATCTTTCAACTACCGTCCCTGCGATCAAAGAAACAATCGAAGACCATG ATGAGCGCCTTGGTGCAGACATTATTCAAAAGGCGTTGGTAGCTCCCGCTTCACTGATTG CCCACAATGCTGGAGTGGAAGGGGAAGTGGTAGTTGAGAAGATCAAGGACGGCGAGTGGG AAGTCGGGTACAATGCGATGAACGACAAGTATGAGAACTTGATTGAGGCGGGTGTTATTG ACCCAGCTAAGGTGACGAGATGCGCGCTCCAGAATGCCGCCTCGGTGGCTGGAATGGTCC TTACCACACAGGCCATTGTTGTCGAGAAGCCGAAGCCCAAGGCTCCTGTTGCTGAGCCGG CAGAGGGAACCCTTACCGTCTAAACAGTGGTGAATTTCTTCAGGGTGGCTTTGTTTAGAT GGTTCATACCAACTGAAATGGTAGAATTTTTGTCTGGGAGTTTTTGGTTCAGATCAACCG AAAGGTCTAGTGTAGGATTGGTTTCCATTTTTGAGATTGAAGGTGCAACCTGCCTGATCT GAACTCATATGTCCATCAAAGAAATAATTTGCATCATTATCGTCATCTTCGGTTTAAACT TTATAAAGTAAATCATATGGTGTTTCT