Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0277400-01
CDS Infomation	cds chromosome:IRGSP-1.0:12:10281013:10286711:-1 gene:Os12g0277400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:plant U-box-containing protein 23, U-box protein 23 description:Armadillo-like helical domain containing protein. (Os12t0277400-01)
Sequence	ATGGCAGAAGGTCAGGATGGTTATTTTGACTCATCCACTGACAGCTTGCGTGTTGAGCCT ATTTATGAATCATTCTTGTGTCCTCTCTCTAAACAAGTTATGCGGGATCCTGTCACTATA GAGAGTGGTGCCACATTTGAACGTGAAGCTATTCTGAAGTGGTTCAAGGACAATGGTAGC GGTGGGAGGAGACTTGTCTGCCCTGTTACTAATAAGGAACTCAGCAGTACTGAGTTAAAT CCAAGTATTGCTCTGCGGAATACCATTGATGAATGGATGCATAGAAATGAGGCAGCGAAA CTTGACGTTGCCCGTAAGTCATTAACCTCTGATTGTTCAGAAGGTGATATTTTGCAAGCT CTTGAGTATGTTGCGGAGATATGCCAGAGAAGTAGATCCAGTAGACATTTAGTGAGGAAA GTTGGGTTGATTAGCTTGATTACTGACTTGTTGAAGAATAGCAGTCCAAAAGTACGTCAA AAGGCATTGGGAAGCCTTCGCTTTGTAGCAAAAAATGACAATGACAACAAGAATGAAATT GCTGCTGGGGACAATATTCGCACTATTGTGAAGTTCTTAAATCATGGGCACTCACAGGAG AAAGAACAGGCTGTATCTTTGTTATATGAACTTTCAGAATATAAACCTCTTTCGGAAAAG ATTGGCAGTGTTTCTGGTGCTATTCTTATTCTTGTCGGCTTGTCGAGTAGTAAAGTAGAA AACCTATTGACAGTTGATAGAGCTGAGAAGACATTGGAAAATTTAGAGAGCTGCGAAAAG AATGTTAGACAGATGGCTGAAAACGGTAGGCTGCAACCACTTCTTAGGCTTCTCCTTGAA GGTTCATCTGATACACAATTATCCATGGCTGCACATCTTGGAGAGCTTGTTTTAAGCAAT GATGTGAAGGTACTTGTGGCACAAACAGCAGGCTCTACACTGGTGAATATCATGAAAAGT GGGAACAGGGAAGCCAGAGAAGCAGCTCTTAAGGCATTGAATCAAATTTCATCTTATGAT ACCAGCGCAAAGATACTTATTGAAGCAGGCATTCTTCCACCTCTCATCACAGATCTCTTC ACTGTTGGCAGTAACCAGCTTCCAATGAGGTTGAAGGAAGTATCGGCGACAATTCTTGCA AATATTGTGGCATCAGGTGCAAGTTTTGAGTCCGTTCCACTTGATCACAACCGCCAGAAC TTGGTGTCAGAAGAAATTGTTCACAACCTGCTTCATCTCATCAGCAATACTGGACCTGCA ATTGAGTGCAAATTACTTCAAGTCCTTGTTGGTCTAACCACTTCTGCTACAACTGTCCAA AGCATAGTTGATGCCATCAAAAGCTCTGGTGCTACTGTCAGTTTGATTCAGTTTGTAGAA GCACCTCAAAGAGAAGTTCGCTTGGCTTCCATCAAACTTTTGAATAATATATCACCTTTT ATGGGTCAAGAACTAGCTGAAGCTTTTCGTGGAAATTTTAGTCAACTCAGCAGCTTGGTC AGGGTAATTGCTGACAACAACGGAATTTCTGAAGAACAAGCAGCAGCTGCTGGCCTCATA GCTGATCTTCCTCCGCGGGACTCAGTACTCACCAGACGTCTTCTACAAGATGGGGCCTTT TCCACAATCATAACAAAAGTGACAATGGTTCGGCAAGGGGATATTCGTGGTGGCCGTTTT GTCAATCCATTTCTTGAAGGTCTAGTTAGGGTAGTTTCCCGGATCACATTTATCTTGGAT GATCTAGATATCATTGATGTTGCTCGTGACTACAATCTCACTCCCCTCTTTACTGACCTA CTTCAGATGAATGGTCTCGACACTGTCCAGATTGTCTCTGCTACTGCACTAGAGAATCTC TCTCGCCAGTCAAAGCTTCTAACTAGGATAGTGCCGGCTCCCAACCCAGGATTTTGTTTT TCAATATTTCCATGCCTCAGTCAGAAGTCCGTGGCAACTGGCGCTTGCAGAGTCCATGTT GGGATATGTTCTGCAAGGGAGAGCTTTTGTCTCTTGGAAGGGAAGGCAGTAGAAAAGTTG GTCGCTTGCTTGGACCACAACAATGAGAAAGTGGTTGAAGCTGCTCTAGCAGCACTGTCC ACCTTGTTGGAGGATGGAGTAGACATTGAACAAGGTGTCATGGTCTTGTGTGATGCAGAG GGGGTCAATCCAATTCTAGAGGTATTATGCGAGAATCGTAATGAGGCACTTCGGCAGCGA GCAGTGTGGGCGGTGGAGAGGATCCTGAGGATAGACGAAATAGCTTATGAGATATCTGGA AACCAAAATGTTGGAACAGCATTAGTTGAAGCATTCAGGCATGGTGACTCCAGGACAAGA CAAATAGCAGAGCGAGCACTAAAGCATGTTGACAAGCTGCCCAATTTCTCTGGAATATTT TCCAAGATGGGGGCAGCATGA

Peptide Sequence

PEP ID	Os12t0277400-01
PEP Infomation	pep chromosome:IRGSP-1.0:12:10281013:10286711:-1 gene:Os12g0277400 transcript:Os12t0277400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:plant U-box-containing protein 23, U-box protein 23 description:Armadillo-like helical domain containing protein. (Os12t0277400-01)
Sequence	MAEGQDGYFDSSTDSLRVEPIYESFLCPLSKQVMRDPVTIESGATFEREAILKWFKDNGS GGRRLVCPVTNKELSSTELNPSIALRNTIDEWMHRNEAAKLDVARKSLTSDCSEGDILQA LEYVAEICQRSRSSRHLVRKVGLISLITDLLKNSSPKVRQKALGSLRFVAKNDNDNKNEI AAGDNIRTIVKFLNHGHSQEKEQAVSLLYELSEYKPLSEKIGSVSGAILILVGLSSSKVE NLLTVDRAEKTLENLESCEKNVRQMAENGRLQPLLRLLLEGSSDTQLSMAAHLGELVLSN DVKVLVAQTAGSTLVNIMKSGNREAREAALKALNQISSYDTSAKILIEAGILPPLITDLF TVGSNQLPMRLKEVSATILANIVASGASFESVPLDHNRQNLVSEEIVHNLLHLISNTGPA IECKLLQVLVGLTTSATTVQSIVDAIKSSGATVSLIQFVEAPQREVRLASIKLLNNISPF MGQELAEAFRGNFSQLSSLVRVIADNNGISEEQAAAAGLIADLPPRDSVLTRRLLQDGAF STIITKVTMVRQGDIRGGRFVNPFLEGLVRVVSRITFILDDLDIIDVARDYNLTPLFTDL LQMNGLDTVQIVSATALENLSRQSKLLTRIVPAPNPGFCFSIFPCLSQKSVATGACRVHV GICSARESFCLLEGKAVEKLVACLDHNNEKVVEAALAALSTLLEDGVDIEQGVMVLCDAE GVNPILEVLCENRNEALRQRAVWAVERILRIDEIAYEISGNQNVGTALVEAFRHGDSRTR QIAERALKHVDKLPNFSGIFSKMGAA

Transcript Sequence

Transcript ID	Os12t0277400-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:10281013:10286711:-1 gene:Os12g0277400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:plant U-box-containing protein 23, U-box protein 23 description:Armadillo-like helical domain containing protein. (Os12t0277400-01)
Sequence	ACCCGGAGGCTGGGACAGTCCCGCGAGTGGTGCGTTTCCGGTAACCAACCAATCATTCCC CCCAATCAATAATCTAGGCAGCCGAAATCCCAGCCGTCCGATGCGACGCAGGCGGCGGCG GCGGGCGTCCAACCCAGCACGCGTCGCGTCGCGTCGGTTTGGGTTTGGGTTAGCCCAGCC GCTGCCCTGCCACTGCCAGCCAGACTCGCAGCAGCAGTCGCCGCCTCGAGCCAACGCATC CTCTCTCACCTCACCTCACCTCGCCCCACCCTCCCCGCCTCCTCCTCCTCCGCCGCCGCC GGTGAGGGTCCCCTCCTCCTCCTCCTCCTCCGGCGAGATCCACCCAATCCCTCCCCAGTC CCCGCTCGGCGCGACGGCAGCCAGATCCGCCGCTGCCGCTGCGATGCCCCGGTAGCGAGC GGTGGGTGGGTCCCGCCTGAAGCCGCCCGCGATTCCCGGGGTCAGGCGCCTCCTCCTCCG CCGTCTCGCTCCTGAGGTATTTCTTCACATCGAGTGTTCCTCATCAACCTGCGCAACATA TATTTCCAACATAACATACAACCCTGAGCCTTTTGTATAAAAGTGATGGCAGAAGGTCAG GATGGTTATTTTGACTCATCCACTGACAGCTTGCGTGTTGAGCCTATTTATGAATCATTC TTGTGTCCTCTCTCTAAACAAGTTATGCGGGATCCTGTCACTATAGAGAGTGGTGCCACA TTTGAACGTGAAGCTATTCTGAAGTGGTTCAAGGACAATGGTAGCGGTGGGAGGAGACTT GTCTGCCCTGTTACTAATAAGGAACTCAGCAGTACTGAGTTAAATCCAAGTATTGCTCTG CGGAATACCATTGATGAATGGATGCATAGAAATGAGGCAGCGAAACTTGACGTTGCCCGT AAGTCATTAACCTCTGATTGTTCAGAAGGTGATATTTTGCAAGCTCTTGAGTATGTTGCG GAGATATGCCAGAGAAGTAGATCCAGTAGACATTTAGTGAGGAAAGTTGGGTTGATTAGC TTGATTACTGACTTGTTGAAGAATAGCAGTCCAAAAGTACGTCAAAAGGCATTGGGAAGC CTTCGCTTTGTAGCAAAAAATGACAATGACAACAAGAATGAAATTGCTGCTGGGGACAAT ATTCGCACTATTGTGAAGTTCTTAAATCATGGGCACTCACAGGAGAAAGAACAGGCTGTA TCTTTGTTATATGAACTTTCAGAATATAAACCTCTTTCGGAAAAGATTGGCAGTGTTTCT GGTGCTATTCTTATTCTTGTCGGCTTGTCGAGTAGTAAAGTAGAAAACCTATTGACAGTT GATAGAGCTGAGAAGACATTGGAAAATTTAGAGAGCTGCGAAAAGAATGTTAGACAGATG GCTGAAAACGGTAGGCTGCAACCACTTCTTAGGCTTCTCCTTGAAGGTTCATCTGATACA CAATTATCCATGGCTGCACATCTTGGAGAGCTTGTTTTAAGCAATGATGTGAAGGTACTT GTGGCACAAACAGCAGGCTCTACACTGGTGAATATCATGAAAAGTGGGAACAGGGAAGCC AGAGAAGCAGCTCTTAAGGCATTGAATCAAATTTCATCTTATGATACCAGCGCAAAGATA CTTATTGAAGCAGGCATTCTTCCACCTCTCATCACAGATCTCTTCACTGTTGGCAGTAAC CAGCTTCCAATGAGGTTGAAGGAAGTATCGGCGACAATTCTTGCAAATATTGTGGCATCA GGTGCAAGTTTTGAGTCCGTTCCACTTGATCACAACCGCCAGAACTTGGTGTCAGAAGAA ATTGTTCACAACCTGCTTCATCTCATCAGCAATACTGGACCTGCAATTGAGTGCAAATTA CTTCAAGTCCTTGTTGGTCTAACCACTTCTGCTACAACTGTCCAAAGCATAGTTGATGCC ATCAAAAGCTCTGGTGCTACTGTCAGTTTGATTCAGTTTGTAGAAGCACCTCAAAGAGAA GTTCGCTTGGCTTCCATCAAACTTTTGAATAATATATCACCTTTTATGGGTCAAGAACTA GCTGAAGCTTTTCGTGGAAATTTTAGTCAACTCAGCAGCTTGGTCAGGGTAATTGCTGAC AACAACGGAATTTCTGAAGAACAAGCAGCAGCTGCTGGCCTCATAGCTGATCTTCCTCCG CGGGACTCAGTACTCACCAGACGTCTTCTACAAGATGGGGCCTTTTCCACAATCATAACA AAAGTGACAATGGTTCGGCAAGGGGATATTCGTGGTGGCCGTTTTGTCAATCCATTTCTT GAAGGTCTAGTTAGGGTAGTTTCCCGGATCACATTTATCTTGGATGATCTAGATATCATT GATGTTGCTCGTGACTACAATCTCACTCCCCTCTTTACTGACCTACTTCAGATGAATGGT CTCGACACTGTCCAGATTGTCTCTGCTACTGCACTAGAGAATCTCTCTCGCCAGTCAAAG CTTCTAACTAGGATAGTGCCGGCTCCCAACCCAGGATTTTGTTTTTCAATATTTCCATGC CTCAGTCAGAAGTCCGTGGCAACTGGCGCTTGCAGAGTCCATGTTGGGATATGTTCTGCA AGGGAGAGCTTTTGTCTCTTGGAAGGGAAGGCAGTAGAAAAGTTGGTCGCTTGCTTGGAC CACAACAATGAGAAAGTGGTTGAAGCTGCTCTAGCAGCACTGTCCACCTTGTTGGAGGAT GGAGTAGACATTGAACAAGGTGTCATGGTCTTGTGTGATGCAGAGGGGGTCAATCCAATT CTAGAGGTATTATGCGAGAATCGTAATGAGGCACTTCGGCAGCGAGCAGTGTGGGCGGTG GAGAGGATCCTGAGGATAGACGAAATAGCTTATGAGATATCTGGAAACCAAAATGTTGGA ACAGCATTAGTTGAAGCATTCAGGCATGGTGACTCCAGGACAAGACAAATAGCAGAGCGA GCACTAAAGCATGTTGACAAGCTGCCCAATTTCTCTGGAATATTTTCCAAGATGGGGGCA GCATGACAATCTTAGAAAAGAATAGGCTAGCTCTACTTCACACGTCGATTGCAGATCCTC TTGAGTTGCAGAGGAACACAGAGCTTGAATCTTTGTGCATGCCGAATGTCAGGATTGTGT CCCCAGCTTAACAATGTTGGTCTTGCAGACTGCGGCTCTCCAAATGGTTTTCGAATAGTC AGATTGACTGAATGAAAATTGAAGGTATTGCATGTGTTGTATAGTGTGGTGTATATCTTT CCCTTGTAATCTTGTGTCTGTATTATTCAGATGGCCGGATCCATAGCATGCTATTTTTCC TCTGTTCATACAATATTTATACATAAACCCCAACATGGGGGGTCAAAGGAAAGGGAAAAG AAGTGTTGCATAAAAGAAGTTTTAGCAGTTTTCATCC