Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0277000-01
CDS Infomation	cds chromosome:IRGSP-1.0:12:10254122:10257442:-1 gene:Os12g0277000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:plant U-box-containing protein 25, U-box protein 25 description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os12t0277000-01);Hypothetical conserved gene. (Os12t0277000-02)
Sequence	ATGGCCCAGCGCCGCCAAGGATCGCAGCGCCAAGAACAAGCTTGGTGGGTTGCGGAGGGT GCTCGGGACTGGTGCGGCGAGGGGTCCGACGATGGGGAGGAGGGCGAGGAGGAGGAGGAG GACGGGGTGCTGTCGGCGTTCCTGTGCCCGATCACCATGGAGGTGATGCGGGACCCGGTG GTGGTGGAGACGGGCCACGCGTTCGAGCGGGAGGCGATCGCGCGGTGGTTCTCGGAGTGC GCCTCGCTCGGCGCGGCGCCGCGGTGCCCCGTCACGATGGAGGTGGTCGACGGCGCGGAC GTGAAGCCCGTCGTGGCGCTGCGGGCGGCCATCGAGGAGTGGACGAGCAGGCGGGAGACG GCGGCGCTCCGGAGGGCGTGCCGGTGGCTCACCAAGGCCGCCTCGGAGAAGGAGGCGCTG CGCGGGCTCGACGCCGTGATGCGCGGGTGGAAGCTTGCGAGGGTCGGCAAGCGCGTCGTG CGCCGCGACGGGATGGTGCCCATGGTGGCCGCCATGCTGAGGAACGGCAGCGCAAGGGTG CGTCTCAAAGCGTTGCAAGCCCTTCGGGAGTTTGCAAGAGAGGACGATGAATACAGGGAT TCTGTATCTGAAGGGGACACAATTCGCAGGATTGTTAAGTTCATCGATTTCGAGGATTGC CAGGAGAGGGAGTTGGCTGTATCTCTTCTGTGTGAGCTGTCGAAATCTGAAATGGTATGC GAAAAGATAAGCGAATTGAATGGAGCGATACTTATCTTGGGCAAGGTGGCATGTAGCAAA TCACAGAATCCAGCGTTAGCCGAGGAGGCTGAGATGACGCTTGAGAATCTGGAGAAATGC GAGAAAAATGTCCTGCAAATGGCTGAAAATGGAAGACTGGAACCTCTACTAAACCTGCTT ATTGAAGGTTCTCCAGAAAAGCAGTTGCGGATAGCATCATCTCTAGAAAAGATTGTTCTG TCTAACGACTTGAAAAACTTGGTGGCCCAAAGAGTGGGTTTACTGTTTGCTGGTGTTGTT GAAAATGGTACCTTGCCGGCAAAAGAAGTTGCTTTCAAGGTGTTAGATCATATATCCACC AATACAGAAAGTGCCAAGGTTCTTATAGAGGATGGAATCCTTTTACCGCTTTTCCGAGTT CTCTCTGTTGATGGTGTCAAATTCCTTCCACCAAGGCTGCAAGAGGCCGCTGCAGCAGTT CTATCTAATCTGGTAGCTTGTGGTATTGACTTTGGGACAGTCCCACTGGATGGTAATCGT ACTATAGTGTCTGAAGACATTGTTCACAGCTTACTTCATTTGATTAGTAACACCTCTCCG CCAATACAGTGCAAGCTTCTTGAAATATTTGTAATGCTAAGTAGTTCTACCACAACAGTT CTGTCAATTATCTCAGCTATAAGATCATCTGGGGCTATCACAAACTTGGTACAATTTGTA GAGAGTGATCATCAGGAGAGCCGTGCTGCTTCCATAAAGCTGCTGTGCAAAATCTCATTT GACATGGACCATGAGATAGCACAAGTCCTCCGAAGTAGTCCTACATTGCTTGGATGCTTA GTTAGGATTGTCAGTGAAAATGATGCAAATGCAGATGAGCAAGATGCTGCACTTCAGATT CTGGCAAATCTTCCTAAAAGGGACAGACGTCTTACCATGGAGCTCATGGAGCAAGGGGCT TTCAAATATATTGCGCGCAAAGTTTTAAACATATGTAGAAGAGGAACTGCCAATAACATA GTTGATAACACGATGCTTGAAGGGCTTGTAAAAGTTCTGGCAAGGATAACGTACATTCTA CGGGAGGAGCCACGCTGTGTTGCCCTTGCTCGTGAATACAATCTTGCTTCACTGTTTACC AGCTTGCTTCGGCTGAATGGGCTGGATGGTGTGCAGCTGCTCTCTGCAAAGGCATTAGTG AATCTCTCTGTTGAATCAAGATATATGACTGGCACACCAAATTTCGATGAACATGAACAG AAGTCTGGGCTTACCTGGTTTGGTAAGAAACCACCAGGTATTCAACTTTGTCGTGTTCAC TCTGGAATCTGCTCGATTAGAGACAATTTTTGTATTCTTGAAGGGAAGGCAGTGGAGCGA TTGGTTGTTTGTCTTAGCCATCAAAACAAGAAGGTCGTTGAAGCCTCTTTGGCTGCACTT TGCACCCTACTTGGGGATGGCGTGGAGATCACTGAAGGTGTTTCGGTGCTCTATATGGCC AATGCGGTTGAACCAATATTTGAAATCTTGAAGGGAAACCCAACAGGCACACTTCAGCAG AGGGTGACATGGGCTGTCGAGAGGATTTTGCGGGCAGAGAACATTGCAAAAGCAGCTTCA AGCGACCGTGGCTTGAGTTCTGCCCTTGTTCATGCTTTCCAGAATGGGGATTCCAGAACA CGACGTATCGCAGAGGCATCACTGAAGCACATTAACAAGTTGCCAACTTTCTCCCAAATC ATTGATAAGCATCCCTCGAGACGAGGTTCGTCAATTGGAAGCATGGAGCGTTACTTTAGG TCTGATCGCTAG

Peptide Sequence

PEP ID	Os12t0277000-01
PEP Infomation	pep chromosome:IRGSP-1.0:12:10254122:10257442:-1 gene:Os12g0277000 transcript:Os12t0277000-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:plant U-box-containing protein 25, U-box protein 25 description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os12t0277000-01);Hypothetical conserved gene. (Os12t0277000-02)
Sequence	MAQRRQGSQRQEQAWWVAEGARDWCGEGSDDGEEGEEEEEDGVLSAFLCPITMEVMRDPV VVETGHAFEREAIARWFSECASLGAAPRCPVTMEVVDGADVKPVVALRAAIEEWTSRRET AALRRACRWLTKAASEKEALRGLDAVMRGWKLARVGKRVVRRDGMVPMVAAMLRNGSARV RLKALQALREFAREDDEYRDSVSEGDTIRRIVKFIDFEDCQERELAVSLLCELSKSEMVC EKISELNGAILILGKVACSKSQNPALAEEAEMTLENLEKCEKNVLQMAENGRLEPLLNLL IEGSPEKQLRIASSLEKIVLSNDLKNLVAQRVGLLFAGVVENGTLPAKEVAFKVLDHIST NTESAKVLIEDGILLPLFRVLSVDGVKFLPPRLQEAAAAVLSNLVACGIDFGTVPLDGNR TIVSEDIVHSLLHLISNTSPPIQCKLLEIFVMLSSSTTTVLSIISAIRSSGAITNLVQFV ESDHQESRAASIKLLCKISFDMDHEIAQVLRSSPTLLGCLVRIVSENDANADEQDAALQI LANLPKRDRRLTMELMEQGAFKYIARKVLNICRRGTANNIVDNTMLEGLVKVLARITYIL REEPRCVALAREYNLASLFTSLLRLNGLDGVQLLSAKALVNLSVESRYMTGTPNFDEHEQ KSGLTWFGKKPPGIQLCRVHSGICSIRDNFCILEGKAVERLVVCLSHQNKKVVEASLAAL CTLLGDGVEITEGVSVLYMANAVEPIFEILKGNPTGTLQQRVTWAVERILRAENIAKAAS SDRGLSSALVHAFQNGDSRTRRIAEASLKHINKLPTFSQIIDKHPSRRGSSIGSMERYFR SDR

Transcript Sequence

Transcript ID	Os12t0277000-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:10254122:10257442:-1 gene:Os12g0277000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:plant U-box-containing protein 25, U-box protein 25 description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os12t0277000-01);Hypothetical conserved gene. (Os12t0277000-02)
Sequence	GTCAACTCCAGCTCGGCTTCTCCTCCTCCTCCTCCTCCTCCCGCGGCGTCGACGACGACG GCGAATGGCCCAGCGCCGCCAAGGATCGCAGCGCCAAGAACAAGCTTGGTGGGTTGCGGA GGGTGCTCGGGACTGGTGCGGCGAGGGGTCCGACGATGGGGAGGAGGGCGAGGAGGAGGA GGAGGACGGGGTGCTGTCGGCGTTCCTGTGCCCGATCACCATGGAGGTGATGCGGGACCC GGTGGTGGTGGAGACGGGCCACGCGTTCGAGCGGGAGGCGATCGCGCGGTGGTTCTCGGA GTGCGCCTCGCTCGGCGCGGCGCCGCGGTGCCCCGTCACGATGGAGGTGGTCGACGGCGC GGACGTGAAGCCCGTCGTGGCGCTGCGGGCGGCCATCGAGGAGTGGACGAGCAGGCGGGA GACGGCGGCGCTCCGGAGGGCGTGCCGGTGGCTCACCAAGGCCGCCTCGGAGAAGGAGGC GCTGCGCGGGCTCGACGCCGTGATGCGCGGGTGGAAGCTTGCGAGGGTCGGCAAGCGCGT CGTGCGCCGCGACGGGATGGTGCCCATGGTGGCCGCCATGCTGAGGAACGGCAGCGCAAG GGTGCGTCTCAAAGCGTTGCAAGCCCTTCGGGAGTTTGCAAGAGAGGACGATGAATACAG GGATTCTGTATCTGAAGGGGACACAATTCGCAGGATTGTTAAGTTCATCGATTTCGAGGA TTGCCAGGAGAGGGAGTTGGCTGTATCTCTTCTGTGTGAGCTGTCGAAATCTGAAATGGT ATGCGAAAAGATAAGCGAATTGAATGGAGCGATACTTATCTTGGGCAAGGTGGCATGTAG CAAATCACAGAATCCAGCGTTAGCCGAGGAGGCTGAGATGACGCTTGAGAATCTGGAGAA ATGCGAGAAAAATGTCCTGCAAATGGCTGAAAATGGAAGACTGGAACCTCTACTAAACCT GCTTATTGAAGGTTCTCCAGAAAAGCAGTTGCGGATAGCATCATCTCTAGAAAAGATTGT TCTGTCTAACGACTTGAAAAACTTGGTGGCCCAAAGAGTGGGTTTACTGTTTGCTGGTGT TGTTGAAAATGGTACCTTGCCGGCAAAAGAAGTTGCTTTCAAGGTGTTAGATCATATATC CACCAATACAGAAAGTGCCAAGGTTCTTATAGAGGATGGAATCCTTTTACCGCTTTTCCG AGTTCTCTCTGTTGATGGTGTCAAATTCCTTCCACCAAGGCTGCAAGAGGCCGCTGCAGC AGTTCTATCTAATCTGGTAGCTTGTGGTATTGACTTTGGGACAGTCCCACTGGATGGTAA TCGTACTATAGTGTCTGAAGACATTGTTCACAGCTTACTTCATTTGATTAGTAACACCTC TCCGCCAATACAGTGCAAGCTTCTTGAAATATTTGTAATGCTAAGTAGTTCTACCACAAC AGTTCTGTCAATTATCTCAGCTATAAGATCATCTGGGGCTATCACAAACTTGGTACAATT TGTAGAGAGTGATCATCAGGAGAGCCGTGCTGCTTCCATAAAGCTGCTGTGCAAAATCTC ATTTGACATGGACCATGAGATAGCACAAGTCCTCCGAAGTAGTCCTACATTGCTTGGATG CTTAGTTAGGATTGTCAGTGAAAATGATGCAAATGCAGATGAGCAAGATGCTGCACTTCA GATTCTGGCAAATCTTCCTAAAAGGGACAGACGTCTTACCATGGAGCTCATGGAGCAAGG GGCTTTCAAATATATTGCGCGCAAAGTTTTAAACATATGTAGAAGAGGAACTGCCAATAA CATAGTTGATAACACGATGCTTGAAGGGCTTGTAAAAGTTCTGGCAAGGATAACGTACAT TCTACGGGAGGAGCCACGCTGTGTTGCCCTTGCTCGTGAATACAATCTTGCTTCACTGTT TACCAGCTTGCTTCGGCTGAATGGGCTGGATGGTGTGCAGCTGCTCTCTGCAAAGGCATT AGTGAATCTCTCTGTTGAATCAAGATATATGACTGGCACACCAAATTTCGATGAACATGA ACAGAAGTCTGGGCTTACCTGGTTTGGTAAGAAACCACCAGGTATTCAACTTTGTCGTGT TCACTCTGGAATCTGCTCGATTAGAGACAATTTTTGTATTCTTGAAGGGAAGGCAGTGGA GCGATTGGTTGTTTGTCTTAGCCATCAAAACAAGAAGGTCGTTGAAGCCTCTTTGGCTGC ACTTTGCACCCTACTTGGGGATGGCGTGGAGATCACTGAAGGTGTTTCGGTGCTCTATAT GGCCAATGCGGTTGAACCAATATTTGAAATCTTGAAGGGAAACCCAACAGGCACACTTCA GCAGAGGGTGACATGGGCTGTCGAGAGGATTTTGCGGGCAGAGAACATTGCAAAAGCAGC TTCAAGCGACCGTGGCTTGAGTTCTGCCCTTGTTCATGCTTTCCAGAATGGGGATTCCAG AACACGACGTATCGCAGAGGCATCACTGAAGCACATTAACAAGTTGCCAACTTTCTCCCA AATCATTGATAAGCATCCCTCGAGACGAGGTTCGTCAATTGGAAGCATGGAGCGTTACTT TAGGTCTGATCGCTAGGCTATGAAATTGTGAAGTAACCGAATGCCATGACCTGCCTATGC CTTATGGACAAGGAATTTTTTTGCCATTTCAAGTTAATTTTGTTGATTTGCTAACGTTTG GAATTAGGGATTTTAGTTTTTGTGTCAGAAAAAAATAGTAGTTAGGCATTGATAGTCTTG GTAATGTGCATATTGTTCTGTACTTGTAATAAATTTTGTAGATCATGTGTATATATTGTT TTCTGTACTTCTAATTTTGATAATCTGCAAGTCTAATGAAGGC