Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0273800-00
CDS Infomation

cds chromosome:IRGSP-1.0:12:10053411:10056454:1 gene:Os12g0273800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0147O06.5 protein. (Os12t0273800-00)
Sequence

ATGGGCGCCATCTCCAAGCCATTGCTCCTTGCCATCCTCTGCTGCATCGTCTGCCTCTAC
AGCAGCAGCGGCGGCGCCATTGTCGCGGCGGCGCGTGAGCTCGGCGGCGACGCAGCCATG
GCGGCGAGGCACGAGAGGTGGATGGCGCAGCACGGCCGTGTGTACAAGGACGCCGCGGAG
AAGGCGCGGCGGCTCGAGGTGTTCAAGGCCAACGTCGCGTTCATCGAGTCGTTCAACGCC
GGTGGCAAGAACAGGTACTGGCTCGGCGTCAACCAGTTCGCCGATCTCACCAGCGAGGAG
TTCAAGGCGACCATGACCAACAGCAAGGGGTTCAGTACTCCTAATAATGGTGTTAGGGTA
TCAACTGGGTTCAAGTATGAGAATGTTAGTGCCGATGCTTTGCCTGCGTCCGTGGACTGG
AGGACCAAAGGTGCCGTCACTCGCATCAAGGACCAAGGCCAATGTGGTTGCTGCTGGGCG
TTCTCGGCCGTGGCAGCGATGGAGGGCTTCGTCAAGCTGAGCACCGGCAAGCTCATCTCG
CTGTCGGAGCAGGAGCTGGTCGACTGCGACGTCGACGGCAACGACCAGGGCTGCGAGGGC
GGCGAGATTGACGGCGCGTTCCAGTTCATCCTCAGCAACGGCGGCCTCACAGCCGAGGCA
AACTACCCGTACACGGCGGAGGACGGCCGGTGCAAGACCACGGCGGCGGCGGACGTCGCC
GCGTCCATCAGGGGCTACGAGGACGTGCCGGCCAACGACGAGCCCAGCCTCATGAAGGCC
GTCGCCGGCCAGCCGGTGTCGGTGGCCGTCGACGCGTCCAAGTTCCAGTTCTACGGCGGC
GGCGTGATGGCCGGCGAATGCGGCACCAGCCTAGACCACGGCGTCACCGTGATCGGCTAT
GGCGCGGCGAGCGATGGCACCAAGTATTGGCTGGTGAAGAACTCGTGGGGCACGACGTGG
GGCGAGGCCGGGTACCTGAGGATGGAGAAGGACATTGATGACAAGAGGGGTATGTGTGGC
CTTGCCATGCAGCCTTCCTACCCTACTGAGTAG

Peptide Sequence

PEP ID

Os12t0273800-00
PEP Infomation

pep chromosome:IRGSP-1.0:12:10053411:10056454:1 gene:Os12g0273800 transcript:Os12t0273800-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0147O06.5 protein. (Os12t0273800-00)
Sequence

MGAISKPLLLAILCCIVCLYSSSGGAIVAAARELGGDAAMAARHERWMAQHGRVYKDAAE
KARRLEVFKANVAFIESFNAGGKNRYWLGVNQFADLTSEEFKATMTNSKGFSTPNNGVRV
STGFKYENVSADALPASVDWRTKGAVTRIKDQGQCGCCWAFSAVAAMEGFVKLSTGKLIS
LSEQELVDCDVDGNDQGCEGGEIDGAFQFILSNGGLTAEANYPYTAEDGRCKTTAAADVA
ASIRGYEDVPANDEPSLMKAVAGQPVSVAVDASKFQFYGGGVMAGECGTSLDHGVTVIGY
GAASDGTKYWLVKNSWGTTWGEAGYLRMEKDIDDKRGMCGLAMQPSYPTE

Transcript Sequence

Transcript ID

Os12t0273800-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:10053411:10056454:1 gene:Os12g0273800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0147O06.5 protein. (Os12t0273800-00)
Sequence

ATGGGCGCCATCTCCAAGCCATTGCTCCTTGCCATCCTCTGCTGCATCGTCTGCCTCTAC
AGCAGCAGCGGCGGCGCCATTGTCGCGGCGGCGCGTGAGCTCGGCGGCGACGCAGCCATG
GCGGCGAGGCACGAGAGGTGGATGGCGCAGCACGGCCGTGTGTACAAGGACGCCGCGGAG
AAGGCGCGGCGGCTCGAGGTGTTCAAGGCCAACGTCGCGTTCATCGAGTCGTTCAACGCC
GGTGGCAAGAACAGGTACTGGCTCGGCGTCAACCAGTTCGCCGATCTCACCAGCGAGGAG
TTCAAGGCGACCATGACCAACAGCAAGGGGTTCAGTACTCCTAATAATGGTGTTAGGGTA
TCAACTGGGTTCAAGTATGAGAATGTTAGTGCCGATGCTTTGCCTGCGTCCGTGGACTGG
AGGACCAAAGGTGCCGTCACTCGCATCAAGGACCAAGGCCAATGTGGTTGCTGCTGGGCG
TTCTCGGCCGTGGCAGCGATGGAGGGCTTCGTCAAGCTGAGCACCGGCAAGCTCATCTCG
CTGTCGGAGCAGGAGCTGGTCGACTGCGACGTCGACGGCAACGACCAGGGCTGCGAGGGC
GGCGAGATTGACGGCGCGTTCCAGTTCATCCTCAGCAACGGCGGCCTCACAGCCGAGGCA
AACTACCCGTACACGGCGGAGGACGGCCGGTGCAAGACCACGGCGGCGGCGGACGTCGCC
GCGTCCATCAGGGGCTACGAGGACGTGCCGGCCAACGACGAGCCCAGCCTCATGAAGGCC
GTCGCCGGCCAGCCGGTGTCGGTGGCCGTCGACGCGTCCAAGTTCCAGTTCTACGGCGGC
GGCGTGATGGCCGGCGAATGCGGCACCAGCCTAGACCACGGCGTCACCGTGATCGGCTAT
GGCGCGGCGAGCGATGGCACCAAGTATTGGCTGGTGAAGAACTCGTGGGGCACGACGTGG
GGCGAGGCCGGGTACCTGAGGATGGAGAAGGACATTGATGACAAGAGGGGTATGTGTGGC
CTTGCCATGCAGCCTTCCTACCCTACTGAGTAGCTTAGCAAGGTGTTGAATAATTGTATA
CACATCCATATATATTGTCTTAAAAGTAGAAATATTGGAAGATGAGTCTACGATCCACAC
ACAGGAATTTAGAACTAACTGAAAGTTAGAACTAAAAAATAAGAAAACTAAAAGTAGAGT
TTGGAGTTCATATAGAAATACAATTTATAATTACAAAAAATCAAAATTAAAAATAAAAAA
GATTGGG