Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0260500-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:9124141:9125439:-1 gene:Os12g0260500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Oxidoreductase, short chain dehydrogenase/reductase family protein, expressed. (Os12t0260500-01)
Sequence

CTCGTTGTAGCAATATCTCGTTGTAGCCATTTATTTTTTTTTTCCAGCAGGATGTTCAGA
GTAACACAACTTCTCAGAGAGACTACCAAGAGAGTTATTGGAACAAAAACAACTTCCCGT
GCAGATTTAACACTAAGTTGCTTCTCCACGGTGTCCAATTTACAGAGGTTGGCTGGTAAG
GTGGCTGTCATCACCGGCGCGGCGAGCGGCATCGGCAAGGCGACGGCAGCGGAGTTCATC
AAGAATGGCGCCAAGGTCATCCTCGCCGACATCCAGGACGACCTCGCCCGCTCGGTGGCC
TCCGAGCTCGGCCCGGACGCCGCGTACACGCGCTGCGACGTCGCCGACGAGGCGCAGGTC
GCCGCGGCCGTGGACCTCGCCGTGAGGCTGCACGGCCGCCTCGACGTGTTCCACAGCAAC
GCCGGCATCCCGGGGAGGATACCGCAGGACGACGCGCTGTCCGTCGACCTCGCCGGCTTC
GACCGCGTGATGGCGGTGAACGCCCGCCCGGCGCTCGCGGCCATCAAGCACGCCGCGCGC
GTAATGGCGCCTCGCCGCACCGGCTGCGTCATCTGCACGGCGAGCGGCGCGGGCGTCGTC
CCCATGCCGGCGCTCGCCATGTACTCCGTCTCCAAGGCCACCGTCATCGCTGTGGTGCGC
GCCATGGCGGAGCCGCTGGCGCGCCACGGCCTGCGGGTGAACGCCATCTCGCCGGGGGCG
ACGAGGACGCCGATGATGCTGAACGAGATCCCGCGCCTCGCCGTGGTGTCCCCGGGCCTG
AGCGGGGAGCTGAGGAGGATGGTGGAGGAGGGCGCCAGCGACGCCGTCAAGGTGCTCGAG
CCGGAGGATATCGCGAGGGCGGCGGTGTACCTGGCCTCCGACGAGGCCAGGTACGTGAAC
GGGCACAACATCGTCGTCGACGCCGGCTACTCGGTGCACAAAGGAGCGGAGAACTCGCCG
GCGCGTTGA

Peptide Sequence

PEP ID

Os12t0260500-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:9124141:9125439:-1 gene:Os12g0260500 transcript:Os12t0260500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Oxidoreductase, short chain dehydrogenase/reductase family protein, expressed. (Os12t0260500-01)
Sequence

LVVAISRCSHLFFFSSRMFRVTQLLRETTKRVIGTKTTSRADLTLSCFSTVSNLQRLAGK
VAVITGAASGIGKATAAEFIKNGAKVILADIQDDLARSVASELGPDAAYTRCDVADEAQV
AAAVDLAVRLHGRLDVFHSNAGIPGRIPQDDALSVDLAGFDRVMAVNARPALAAIKHAAR
VMAPRRTGCVICTASGAGVVPMPALAMYSVSKATVIAVVRAMAEPLARHGLRVNAISPGA
TRTPMMLNEIPRLAVVSPGLSGELRRMVEEGASDAVKVLEPEDIARAAVYLASDEARYVN
GHNIVVDAGYSVHKGAENSPAR

Transcript Sequence

Transcript ID

Os12t0260500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:9124141:9125439:-1 gene:Os12g0260500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Oxidoreductase, short chain dehydrogenase/reductase family protein, expressed. (Os12t0260500-01)
Sequence

GAGCCAACAACGACGACCAGCTCTAGCTCGTTGTAGCAATATCTCGTTGTAGCCATTTAT
TTTTTTTTTCCAGCAGGATGTTCAGAGTAACACAACTTCTCAGAGAGACTACCAAGAGAG
TTATTGGAACAAAAACAACTTCCCGTGCAGATTTAACACTAAGTTGCTTCTCCACGGTGT
CCAATTTACAGAGGTTGGCTGGTAAGGTGGCTGTCATCACCGGCGCGGCGAGCGGCATCG
GCAAGGCGACGGCAGCGGAGTTCATCAAGAATGGCGCCAAGGTCATCCTCGCCGACATCC
AGGACGACCTCGCCCGCTCGGTGGCCTCCGAGCTCGGCCCGGACGCCGCGTACACGCGCT
GCGACGTCGCCGACGAGGCGCAGGTCGCCGCGGCCGTGGACCTCGCCGTGAGGCTGCACG
GCCGCCTCGACGTGTTCCACAGCAACGCCGGCATCCCGGGGAGGATACCGCAGGACGACG
CGCTGTCCGTCGACCTCGCCGGCTTCGACCGCGTGATGGCGGTGAACGCCCGCCCGGCGC
TCGCGGCCATCAAGCACGCCGCGCGCGTAATGGCGCCTCGCCGCACCGGCTGCGTCATCT
GCACGGCGAGCGGCGCGGGCGTCGTCCCCATGCCGGCGCTCGCCATGTACTCCGTCTCCA
AGGCCACCGTCATCGCTGTGGTGCGCGCCATGGCGGAGCCGCTGGCGCGCCACGGCCTGC
GGGTGAACGCCATCTCGCCGGGGGCGACGAGGACGCCGATGATGCTGAACGAGATCCCGC
GCCTCGCCGTGGTGTCCCCGGGCCTGAGCGGGGAGCTGAGGAGGATGGTGGAGGAGGGCG
CCAGCGACGCCGTCAAGGTGCTCGAGCCGGAGGATATCGCGAGGGCGGCGGTGTACCTGG
CCTCCGACGAGGCCAGGTACGTGAACGGGCACAACATCGTCGTCGACGCCGGCTACTCGG
TGCACAAAGGAGCGGAGAACTCGCCGGCGCGTTGAACATGGCTAGTAGCTGGTGCCATGC
ATGTATGCATGCATGTGCCTTTGTCAGCGCCGTAATAATTCTGTTATTGACGTTCTTGAA
ATAAAGATGATGTGGCTGTGCAGTGACGCGACAACAGTTGAAAT