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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0247700-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:8239432:8241147:1 gene:Os12g0247700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:jacalin-related lectin 1 description:Similar to Jasmonate-induced protein. (Os12t0247700-01)
Sequence

ATGGCTGATCCCAGCAAGCTGCAAATCACACCCTGTGGCATGCTTGTTCAGGGCAACCAG
ATCAACTTCACCAAACTCTACCTGCACCACACGCCGGCTGGTCCAGAACAAAACCAGTCG
GCGGTCACAAGCAATGACAAAAAAACCGGGTTGGGTTGCATTGTCGTTAACAACTGGTCA
GTATATGACGGAATCGGCAGCGACGCCAAGCTTGTTGCCTATGCAAAAGGCCTCCACGTT
TTTGCGGGTGCCTGGCACAACTCCTTCAGCCTAGTGTTCGAGGATGAAAGGCTTAAGGGG
TCCACGCTTCAGGTGATGGGGCTAATTGTCGAAGAAGGTGATTGGGCTATTGTTGGGGGC
ACAGGACAGTTTGCTATGGCAACTGGTGTTATCTTGAAGAAAATGCAAGAACAAAAACAA
TACGGAAACATAATAGAGCTCACTATCCATGGGTTTTGTCCTCTCTTAAAAGGGTCACAG
TGCCCTGTCACCAAGATTGGGCCATGGGGTTCATCTCATGAAGGGACAGTTCAAGACATC
ACTGAGTCTCCAAAGCGTCTCGAAAGCATCACATTATACCACGGCTGGTCTGTTGACTCA
ATCTCGTTTACTTACCTTGACCATGCCGGAGAGAAGCACAAGGCAGGTCCATGGGGTGGT
CCTGGCGGGGATCCCATAATGATTGAATTTGGCAGTTCAGAGTTTCTCAAGGAAGTTTCT
GGAACGTTTGGCCCATATGAGGGCAGCACCGTTATAACATCTATTAATTTTATCACCAAT
AAGCAAACATATGGCCCATTTGGACGACAGGAGGGAACCCCTTTCAGTGTCCCAGCGCAG
AATAACTCCAGTATAGTGGGTTTCTTTGGGCGCAGTGGGAAATACATAAATGCAGTTGGT
GTCTACGTGCAGCCGATCTAA

Peptide Sequence

PEP ID

Os12t0247700-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:8239432:8241147:1 gene:Os12g0247700 transcript:Os12t0247700-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:jacalin-related lectin 1 description:Similar to Jasmonate-induced protein. (Os12t0247700-01)
Sequence

MADPSKLQITPCGMLVQGNQINFTKLYLHHTPAGPEQNQSAVTSNDKKTGLGCIVVNNWS
VYDGIGSDAKLVAYAKGLHVFAGAWHNSFSLVFEDERLKGSTLQVMGLIVEEGDWAIVGG
TGQFAMATGVILKKMQEQKQYGNIIELTIHGFCPLLKGSQCPVTKIGPWGSSHEGTVQDI
TESPKRLESITLYHGWSVDSISFTYLDHAGEKHKAGPWGGPGGDPIMIEFGSSEFLKEVS
GTFGPYEGSTVITSINFITNKQTYGPFGRQEGTPFSVPAQNNSSIVGFFGRSGKYINAVG
VYVQPI

Transcript Sequence

Transcript ID

Os12t0247700-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:8239432:8241147:1 gene:Os12g0247700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:jacalin-related lectin 1 description:Similar to Jasmonate-induced protein. (Os12t0247700-01)
Sequence

TACTCGCAGCGCATCACTCACAGCTACATCCACAAGTACTAAACCAATCTCTGCCAGCAG
TAGCTCTCAGCTATGGCTGATCCCAGCAAGCTGCAAATCACACCCTGTGGCATGCTTGTT
CAGGGCAACCAGATCAACTTCACCAAACTCTACCTGCACCACACGCCGGCTGGTCCAGAA
CAAAACCAGTCGGCGGTCACAAGCAATGACAAAAAAACCGGGTTGGGTTGCATTGTCGTT
AACAACTGGTCAGTATATGACGGAATCGGCAGCGACGCCAAGCTTGTTGCCTATGCAAAA
GGCCTCCACGTTTTTGCGGGTGCCTGGCACAACTCCTTCAGCCTAGTGTTCGAGGATGAA
AGGCTTAAGGGGTCCACGCTTCAGGTGATGGGGCTAATTGTCGAAGAAGGTGATTGGGCT
ATTGTTGGGGGCACAGGACAGTTTGCTATGGCAACTGGTGTTATCTTGAAGAAAATGCAA
GAACAAAAACAATACGGAAACATAATAGAGCTCACTATCCATGGGTTTTGTCCTCTCTTA
AAAGGGTCACAGTGCCCTGTCACCAAGATTGGGCCATGGGGTTCATCTCATGAAGGGACA
GTTCAAGACATCACTGAGTCTCCAAAGCGTCTCGAAAGCATCACATTATACCACGGCTGG
TCTGTTGACTCAATCTCGTTTACTTACCTTGACCATGCCGGAGAGAAGCACAAGGCAGGT
CCATGGGGTGGTCCTGGCGGGGATCCCATAATGATTGAATTTGGCAGTTCAGAGTTTCTC
AAGGAAGTTTCTGGAACGTTTGGCCCATATGAGGGCAGCACCGTTATAACATCTATTAAT
TTTATCACCAATAAGCAAACATATGGCCCATTTGGACGACAGGAGGGAACCCCTTTCAGT
GTCCCAGCGCAGAATAACTCCAGTATAGTGGGTTTCTTTGGGCGCAGTGGGAAATACATA
AATGCAGTTGGTGTCTACGTGCAGCCGATCTAACTTGTCAAAATAAGTATTCCGTGTTTG
AGTTTCACGTGTGTTTTCTGCAGTAAACAAATAAGATGGGGGTCCTCCCTATCATTCCTG
TTGTGATGAGTGATGCTTGGTCGCTGGAGTCCTTCTGAATTTACAGTCGTGTCCTATCAG
TTGTTTCTGTCTGTAGTGTGTTGCATGCATCAATAAAGATCTTCATTGAAGGTTGGTTGT
GTG