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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0242800-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:7919575:7920541:1 gene:Os12g0242800 gene_biotype:protein_coding transcript_biotype:protein_coding description:TRAM, LAG1 and CLN8 homology domain containing protein. (Os12t0242800-01)
Sequence

ATGGCGGCGGGCGCGGAGGCGGCGGCGGAGTCCATGTTCTTGCCGTTCTTGGCGATGTTC
GCGGCTATATACCTCGTCGGGTACCTCGTCGTGTTCCGGCGGTGGGGCGGCGCGCAGAGG
GCGGAGGCGTCGAGCTGCTTCGCGTCGCTGTTCCACGGCACGCCGGCGGCGGCGCTCGCG
CTCCGCGCCGTGCTGTCCAACCCGCGCGGCTGCTGCGTCGGCGTCGCCGGCGACCTCGCG
GCGCCCAACACGCGCGCCGACGAGCTCGCCCTCGACTTCAGCACGGCCTACTTCGCCGTC
GACCTGGCGCACTACCTCGTCCTCCTCCCGGGCGAGCGCCTCTTCGTGGCGCACCACCTC
GCCACGCTCTACGTGCTCGCCACCTGCCGCGCCGCGGCGCGCCGCGGCGCCTGCGCGCTG
CTCGTCATGGAGGTGCTCGCCGAGGCCACCAGCCTCGCGCAGAACCTGTGGACGCTCGCC
GGCATGCGGCGCGCCGGCTCGCCCGCGGCGGCCGCGGCGCACGCGCGGCTGTCGCTCCCG
TTCTACGCCGCGTACACCGCCATGAGGGCGGTGCTCGGGCCGGCGTGGTTCGTGAGGATG
GTGCGGTTCTACTACGCGTCGGACGGCGGCGGCGGCGCCGGCGGCGAGGCGTTGCCGGCG
TGGGCGCGGGCGTCGTGGACGGTGGTGATCGGCGCCGGGATCGTGGTGAGCGTGCTCTGG
GTGAGCAACCTGTGGCTGGAATTCTTCAGAGAAAACAAAAGAAAAGAGAGCAGCAAGGAG
CAGTGA

Peptide Sequence

PEP ID

Os12t0242800-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:7919575:7920541:1 gene:Os12g0242800 transcript:Os12t0242800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:TRAM, LAG1 and CLN8 homology domain containing protein. (Os12t0242800-01)
Sequence

MAAGAEAAAESMFLPFLAMFAAIYLVGYLVVFRRWGGAQRAEASSCFASLFHGTPAAALA
LRAVLSNPRGCCVGVAGDLAAPNTRADELALDFSTAYFAVDLAHYLVLLPGERLFVAHHL
ATLYVLATCRAAARRGACALLVMEVLAEATSLAQNLWTLAGMRRAGSPAAAAAHARLSLP
FYAAYTAMRAVLGPAWFVRMVRFYYASDGGGGAGGEALPAWARASWTVVIGAGIVVSVLW
VSNLWLEFFRENKRKESSKEQ

Transcript Sequence

Transcript ID

Os12t0242800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:7919575:7920541:1 gene:Os12g0242800 gene_biotype:protein_coding transcript_biotype:protein_coding description:TRAM, LAG1 and CLN8 homology domain containing protein. (Os12t0242800-01)
Sequence

GTGGCATTGTGCAGTTGTGATCGGTCGAACAGGTGGTGGGCGGCAATGGCGGCGGGCGCG
GAGGCGGCGGCGGAGTCCATGTTCTTGCCGTTCTTGGCGATGTTCGCGGCTATATACCTC
GTCGGGTACCTCGTCGTGTTCCGGCGGTGGGGCGGCGCGCAGAGGGCGGAGGCGTCGAGC
TGCTTCGCGTCGCTGTTCCACGGCACGCCGGCGGCGGCGCTCGCGCTCCGCGCCGTGCTG
TCCAACCCGCGCGGCTGCTGCGTCGGCGTCGCCGGCGACCTCGCGGCGCCCAACACGCGC
GCCGACGAGCTCGCCCTCGACTTCAGCACGGCCTACTTCGCCGTCGACCTGGCGCACTAC
CTCGTCCTCCTCCCGGGCGAGCGCCTCTTCGTGGCGCACCACCTCGCCACGCTCTACGTG
CTCGCCACCTGCCGCGCCGCGGCGCGCCGCGGCGCCTGCGCGCTGCTCGTCATGGAGGTG
CTCGCCGAGGCCACCAGCCTCGCGCAGAACCTGTGGACGCTCGCCGGCATGCGGCGCGCC
GGCTCGCCCGCGGCGGCCGCGGCGCACGCGCGGCTGTCGCTCCCGTTCTACGCCGCGTAC
ACCGCCATGAGGGCGGTGCTCGGGCCGGCGTGGTTCGTGAGGATGGTGCGGTTCTACTAC
GCGTCGGACGGCGGCGGCGGCGCCGGCGGCGAGGCGTTGCCGGCGTGGGCGCGGGCGTCG
TGGACGGTGGTGATCGGCGCCGGGATCGTGGTGAGCGTGCTCTGGGTGAGCAACCTGTGG
CTGGAATTCTTCAGAGAAAACAAAAGAAAAGAGAGCAGCAAGGAGCAGTGACTGCATTTC
TGCACTTCTGTTGAAATTTTTTTTGCATGATTTGGATGGATGCAATTTTACAGGATTTTC
ATAAGAATCAAACTAATTCATGTGAAATTCTTGTAAGATCCCTTCGTTCCAAAGTATACT
CATTTAG