Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0239000-01
CDS Infomation	cds chromosome:IRGSP-1.0:12:7678711:7686107:-1 gene:Os12g0239000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os12t0239000-01)
Sequence	ATGCCACCCTCTCCCTCCCTGAGGAGATCTCCTTCAAAGGAGATTTCCCATAGGAGGGGC CACAGTTTTGGGAGCACAGTGCCTGCTAAACCAAAGGATGACGAACTCGCATTGTTCAAT GATATGCGGAAAAATGAGGAGGACAACTTCTTGTTGGAGTCGTCCGATAATTTTGATGAA ACGATCTCAAAATTGAGCTATTTTCCGGATCTCAAGCTTGGCGTCAACATTGCCAGACGA GAAGAAAGCCGTGATTTTCTTAACACTGATGGTGACAAGAATGATTATGATTGGTTGTTG ACTCCTCCAGAAACACCACTTTTCCGTTCATTGGATGATGATGAAGACAAGCTCGCTGGT CCAGCTCCTAGGGGCAGGGCTCAGACAAAGCCAATATTGATTTCAAGGTCATCAACAATG GAAAATGCTCAAAGATCTAGTAGAAGCAGTGCAAGCCCAAATAGACTAAGCTTGTCACCA CGCTCAAGTAGCAGCAATACAGCTCTGACAAGGACAAGATCAACGAATTCATCTTCTCGT TGTAGCCCACCACTTTCTCTGCAATCATCCACACCATCTCGAAGATCTCCAACTCCTCCG GGTAATAAGACATTAACACCACCACGGAGGTCACCTAGTCCTGCCTCAAGGAGGATGAGT GCTACTTCAAGTGGACCAACGCTGAATGGAACAAGGGGAGCTTCACCTGTGAAAACTAAT CGTAGGTCATCTTCTCCAAAATTTCAAGGATGGCAGTCAAGTGATCCCGGTTTCTCTTTT GATGCACCTCCAAACCTTCGCACATCTATGTCAGACCGCCCATTATCCCGTTCAAGGGGT GGGTCCCCTTCATCTTTCAGTGGATTAAACATGGTTTCAAGAGGTAGAAGACAATCAATG TCTCCTACCCCGTCAAGAAGAACTATTTCGTCCCATAGTACTGAACGAGATCGTTTCAGT TCATACAGCAAAGCTTCTGCAACATCTTCTGGTGAAGATGATCTAGACTCTATGCAGTCT GTGCCAATTGACTATTCCAGCAGTCCAGCTGTAAAAAAGAGCCTGGCAGTGATGAAGACC AGAACAATTGCATCATCACAGAAGCCATCCAAGAGTTTCTCTCCTAGTTCTGCCCCAAAG AGATCATTTGATTCTGCTGTTTGGTTGATGGATCATCGCAAAGCACCTCAAAGTATGTTC AGGCCACTTCTGTCAAGTGTCCCCACTACCACTTTTGTAGCCGGCAAAGGAAATGTTGTT CATCGCCCTACGTTTTCACACATTTCCTCAGTCACAACCAGCAGCAACGCAAGTTCTGAG CATGGTGCCACTTTTAGCCCTTGTGTGGACATTGACCATGAACGACATGATCTAGTTGGT CAATGGGAAACAAATGACAGTTCCAGAATCCATGAAGAGATATTTATGTTTGATAAATCT GATGAGCTGAATGAAGGATCCAATTGTCATCAGCACAGTTTATCAACTACTTGTAGTGGT TTAGAGAACTCATCAGGCAGAGTCAATTGTGTAGAGAGCACCAAAGAAGGCCTTGATATG AAAAGTAGACGAACAGCTGATCAGATTTCATGTGGTTTTGCAAGTAGTTCTGAGGTTGGA GATGGTGAAATGGCCACATGCACTAGATGTGGAAAGATTTTTAATGTGATGTATTTGAGT GGTGATAATTATTGTGAAGAGTGTGATTTTGGGGATGGGATATTTTCTGCAGGATCTAAG ATACAAACTACAGAAGGACTACATCAGAAGGACCATAAATTTACGCAATCTAAAGTTTGC ATTCCATCGGAAGATCGTCGTCCTATAGCACTAGATTGTGTAGAAGATAGCAGTGATGTA TCTCTTGACCATCAGTTAGTGAGCAATGAACCTCCAGCTGATTATTTACAAAGGTACTCC ACTGAATCAGTGGTGCACACAAATGAGGAAAAGATGTTGGGGAAGCATTTGATGAATCTT AAAGAAAATATCAGTCCACATGATATTGGTGACTCTTCAATGGGAAATAGCAATGATATT TCACCACATACATGTAGTGTAAGTGACTATCAAGAAGCTGAAGCAGCACATGTGACAGAG TATAAGCTTTTCAGACTACAAAAAGGTAACCAAAATCATGAAATGGCCCAATGCCTGTCA GAATCAGATTGCCAACATAATGGATTTATTTCTGGTATGGTGGCCAGTGGATCTCATGAA CTGGGGTCAACTGGGCCTCCAAGCCTTAAGGTTGAAAATGCTGAGGGCAACGGTATATCG GTACTCTTATTGGAGGAGACAAGAAGCAAGAAATGGCCTATTGTGGAAGGGAGGACTTTG GTTACTACCAACATTCATTGTTTGGAACCCTATTATACAGCAGATAGTGTCAGTTTGATG AAGCGTAGCATTGGACGGGATAGCTCTTCAGCTGCTTCTTCCATTGATCTAGGGCCATCA GGGCAATCAGATGTACGCTTTGAGCGCCTTAGAAGTGGTAAGAAGGGTGACTTCGAGAAG TCTCAAATAAGTTGTCAAAGCATTGCTTCAGTGTCGGATATGTCAATTAGCGGTTCATCA GCTTCACATTACCCTCAGAGTTATGTAAATGGAGATGGTTGCCATCCAATCTATAGTTTG GAAACAAGTGCTTTGACAGCTGCGGTTTTTACCGAAGAACATGATGGATCTTTTAAAGAA GCTCTCTCAAGTGCTATAGAGTGCTGGTCTGTTGCACAAGCCATTGTAAATGATGATTGT GAAGTAGAAGATGAAGTAACTCAGAATCAAGATAAAGAAAGGATGGCTCGTGATGATAAT TTAGGTGTTGACATGTGTTCATCATACACTGAAGTGCCAAGTGACATGCCCCAGTCTCCT GCTGCTGACGTTAGCTTCATAGAAAAGACAGAGAACGATAGTCAAGAAGTTCCGGCCATC GCTGACTACTCAGTTGCAACTCCAGAACATCCATGTGATGAGAACAATTCTGACATTCCT AGAATTCTGTCTGAAACGGTTGCAGCTTCTGATGACGAAAGCAAGTTGGATGATTGTGGT GTATCATCTGTCCCTGAGGAGGGTGCATTGGTTTCTGCAAGAGATGAAACCAAAGATGAA GGAAGGAGGAAACAATTTCAGAGATGCTTCACTTTAGAAGAGGCTACGGATACAATTCTC TTTTGTAGTTCCATTGTTCATGACCTAGCATACAAGGCTGCAACAGTTGGACTGGAGCGA GAGCAGGAAGCTGAATTCGCTCATGCCCCTCGACCAACAGTGACCATGGTAGAAAAATTC ATTCCAAGGGAAGATGGTTTGTTGAGAGGTCCTCAGAGGCGAACGACAAGGCGTAAGGTT GAAAGGAAAATACCAGAAGGTGATGGAGAATCCATCACAGATACTGCCAGGACAGAAGTA ATTACTAAAGAGCCAGCACCTGTACGTTCTTCTTCTGAAATTACTACATTTGATAGCTTG AAGCCTCCAAAGATGGAGTCGAAGTGCAACTGCACAATTATGTGA

Peptide Sequence

PEP ID	Os12t0239000-01
PEP Infomation	pep chromosome:IRGSP-1.0:12:7678711:7686107:-1 gene:Os12g0239000 transcript:Os12t0239000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os12t0239000-01)
Sequence	MPPSPSLRRSPSKEISHRRGHSFGSTVPAKPKDDELALFNDMRKNEEDNFLLESSDNFDE TISKLSYFPDLKLGVNIARREESRDFLNTDGDKNDYDWLLTPPETPLFRSLDDDEDKLAG PAPRGRAQTKPILISRSSTMENAQRSSRSSASPNRLSLSPRSSSSNTALTRTRSTNSSSR CSPPLSLQSSTPSRRSPTPPGNKTLTPPRRSPSPASRRMSATSSGPTLNGTRGASPVKTN RRSSSPKFQGWQSSDPGFSFDAPPNLRTSMSDRPLSRSRGGSPSSFSGLNMVSRGRRQSM SPTPSRRTISSHSTERDRFSSYSKASATSSGEDDLDSMQSVPIDYSSSPAVKKSLAVMKT RTIASSQKPSKSFSPSSAPKRSFDSAVWLMDHRKAPQSMFRPLLSSVPTTTFVAGKGNVV HRPTFSHISSVTTSSNASSEHGATFSPCVDIDHERHDLVGQWETNDSSRIHEEIFMFDKS DELNEGSNCHQHSLSTTCSGLENSSGRVNCVESTKEGLDMKSRRTADQISCGFASSSEVG DGEMATCTRCGKIFNVMYLSGDNYCEECDFGDGIFSAGSKIQTTEGLHQKDHKFTQSKVC IPSEDRRPIALDCVEDSSDVSLDHQLVSNEPPADYLQRYSTESVVHTNEEKMLGKHLMNL KENISPHDIGDSSMGNSNDISPHTCSVSDYQEAEAAHVTEYKLFRLQKGNQNHEMAQCLS ESDCQHNGFISGMVASGSHELGSTGPPSLKVENAEGNGISVLLLEETRSKKWPIVEGRTL VTTNIHCLEPYYTADSVSLMKRSIGRDSSSAASSIDLGPSGQSDVRFERLRSGKKGDFEK SQISCQSIASVSDMSISGSSASHYPQSYVNGDGCHPIYSLETSALTAAVFTEEHDGSFKE ALSSAIECWSVAQAIVNDDCEVEDEVTQNQDKERMARDDNLGVDMCSSYTEVPSDMPQSP AADVSFIEKTENDSQEVPAIADYSVATPEHPCDENNSDIPRILSETVAASDDESKLDDCG VSSVPEEGALVSARDETKDEGRRKQFQRCFTLEEATDTILFCSSIVHDLAYKAATVGLER EQEAEFAHAPRPTVTMVEKFIPREDGLLRGPQRRTTRRKVERKIPEGDGESITDTARTEV ITKEPAPVRSSSEITTFDSLKPPKMESKCNCTIM

Transcript Sequence

Transcript ID	Os12t0239000-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:7678711:7686107:-1 gene:Os12g0239000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os12t0239000-01)
Sequence	CCCTCTCTCCTCACACAGTCGCAATCGCAGCACAACAGCACACACGCACACTCTCTCTTC CCAGTCCAGTCCAGTCCAGTCCACCCCCACAGCCGCGCCCTTGCATTGCTTGCTTCTCGC CGCGGCAACGCACCGCATCCACCTGCAGCAGCACGGAAACCCTAGCCAACCCATCCCCAC ACGCCGCGGAGCTCCGAACGCTGCTGCCGCTGCTGCTTTTCCGGCGGCATCAAGCCGGAT CTGCGCCCCCACCCACACTACCCGCTTGCCGAGATTCGGCGCCTCCGCTTGCCGGGAGGC GGAATGCGGTGAGGAGGAGGAGGAGGAGGCGGAATCCGTTTGCCTCTCTGAGCTCTCTCC CCTCCGGCGAGCGAGCCGTGGGGGTGGCGCGGCGTGTGGGACGGCCACACCCCCCTTGCG TGGCCCCTCCTCGCGCAATTCTCGGTTCCAATCGAATTGGAGGTAATTGTTCTGAATGGA CTATCGTCTCCTCGATCTGATATATTGGAAAGGAGGAGGATAGCAAAGTTTTCTCGAAGA GACTTCTAGTCTATAAAGATGCCACCCTCTCCCTCCCTGAGGAGATCTCCTTCAAAGGAG ATTTCCCATAGGAGGGGCCACAGTTTTGGGAGCACAGTGCCTGCTAAACCAAAGGATGAC GAACTCGCATTGTTCAATGATATGCGGAAAAATGAGGAGGACAACTTCTTGTTGGAGTCG TCCGATAATTTTGATGAAACGATCTCAAAATTGAGCTATTTTCCGGATCTCAAGCTTGGC GTCAACATTGCCAGACGAGAAGAAAGCCGTGATTTTCTTAACACTGATGGTGACAAGAAT GATTATGATTGGTTGTTGACTCCTCCAGAAACACCACTTTTCCGTTCATTGGATGATGAT GAAGACAAGCTCGCTGGTCCAGCTCCTAGGGGCAGGGCTCAGACAAAGCCAATATTGATT TCAAGGTCATCAACAATGGAAAATGCTCAAAGATCTAGTAGAAGCAGTGCAAGCCCAAAT AGACTAAGCTTGTCACCACGCTCAAGTAGCAGCAATACAGCTCTGACAAGGACAAGATCA ACGAATTCATCTTCTCGTTGTAGCCCACCACTTTCTCTGCAATCATCCACACCATCTCGA AGATCTCCAACTCCTCCGGGTAATAAGACATTAACACCACCACGGAGGTCACCTAGTCCT GCCTCAAGGAGGATGAGTGCTACTTCAAGTGGACCAACGCTGAATGGAACAAGGGGAGCT TCACCTGTGAAAACTAATCGTAGGTCATCTTCTCCAAAATTTCAAGGATGGCAGTCAAGT GATCCCGGTTTCTCTTTTGATGCACCTCCAAACCTTCGCACATCTATGTCAGACCGCCCA TTATCCCGTTCAAGGGGTGGGTCCCCTTCATCTTTCAGTGGATTAAACATGGTTTCAAGA GGTAGAAGACAATCAATGTCTCCTACCCCGTCAAGAAGAACTATTTCGTCCCATAGTACT GAACGAGATCGTTTCAGTTCATACAGCAAAGCTTCTGCAACATCTTCTGGTGAAGATGAT CTAGACTCTATGCAGTCTGTGCCAATTGACTATTCCAGCAGTCCAGCTGTAAAAAAGAGC CTGGCAGTGATGAAGACCAGAACAATTGCATCATCACAGAAGCCATCCAAGAGTTTCTCT CCTAGTTCTGCCCCAAAGAGATCATTTGATTCTGCTGTTTGGTTGATGGATCATCGCAAA GCACCTCAAAGTATGTTCAGGCCACTTCTGTCAAGTGTCCCCACTACCACTTTTGTAGCC GGCAAAGGAAATGTTGTTCATCGCCCTACGTTTTCACACATTTCCTCAGTCACAACCAGC AGCAACGCAAGTTCTGAGCATGGTGCCACTTTTAGCCCTTGTGTGGACATTGACCATGAA CGACATGATCTAGTTGGTCAATGGGAAACAAATGACAGTTCCAGAATCCATGAAGAGATA TTTATGTTTGATAAATCTGATGAGCTGAATGAAGGATCCAATTGTCATCAGCACAGTTTA TCAACTACTTGTAGTGGTTTAGAGAACTCATCAGGCAGAGTCAATTGTGTAGAGAGCACC AAAGAAGGCCTTGATATGAAAAGTAGACGAACAGCTGATCAGATTTCATGTGGTTTTGCA AGTAGTTCTGAGGTTGGAGATGGTGAAATGGCCACATGCACTAGATGTGGAAAGATTTTT AATGTGATGTATTTGAGTGGTGATAATTATTGTGAAGAGTGTGATTTTGGGGATGGGATA TTTTCTGCAGGATCTAAGATACAAACTACAGAAGGACTACATCAGAAGGACCATAAATTT ACGCAATCTAAAGTTTGCATTCCATCGGAAGATCGTCGTCCTATAGCACTAGATTGTGTA GAAGATAGCAGTGATGTATCTCTTGACCATCAGTTAGTGAGCAATGAACCTCCAGCTGAT TATTTACAAAGGTACTCCACTGAATCAGTGGTGCACACAAATGAGGAAAAGATGTTGGGG AAGCATTTGATGAATCTTAAAGAAAATATCAGTCCACATGATATTGGTGACTCTTCAATG GGAAATAGCAATGATATTTCACCACATACATGTAGTGTAAGTGACTATCAAGAAGCTGAA GCAGCACATGTGACAGAGTATAAGCTTTTCAGACTACAAAAAGGTAACCAAAATCATGAA ATGGCCCAATGCCTGTCAGAATCAGATTGCCAACATAATGGATTTATTTCTGGTATGGTG GCCAGTGGATCTCATGAACTGGGGTCAACTGGGCCTCCAAGCCTTAAGGTTGAAAATGCT GAGGGCAACGGTATATCGGTACTCTTATTGGAGGAGACAAGAAGCAAGAAATGGCCTATT GTGGAAGGGAGGACTTTGGTTACTACCAACATTCATTGTTTGGAACCCTATTATACAGCA GATAGTGTCAGTTTGATGAAGCGTAGCATTGGACGGGATAGCTCTTCAGCTGCTTCTTCC ATTGATCTAGGGCCATCAGGGCAATCAGATGTACGCTTTGAGCGCCTTAGAAGTGGTAAG AAGGGTGACTTCGAGAAGTCTCAAATAAGTTGTCAAAGCATTGCTTCAGTGTCGGATATG TCAATTAGCGGTTCATCAGCTTCACATTACCCTCAGAGTTATGTAAATGGAGATGGTTGC CATCCAATCTATAGTTTGGAAACAAGTGCTTTGACAGCTGCGGTTTTTACCGAAGAACAT GATGGATCTTTTAAAGAAGCTCTCTCAAGTGCTATAGAGTGCTGGTCTGTTGCACAAGCC ATTGTAAATGATGATTGTGAAGTAGAAGATGAAGTAACTCAGAATCAAGATAAAGAAAGG ATGGCTCGTGATGATAATTTAGGTGTTGACATGTGTTCATCATACACTGAAGTGCCAAGT GACATGCCCCAGTCTCCTGCTGCTGACGTTAGCTTCATAGAAAAGACAGAGAACGATAGT CAAGAAGTTCCGGCCATCGCTGACTACTCAGTTGCAACTCCAGAACATCCATGTGATGAG AACAATTCTGACATTCCTAGAATTCTGTCTGAAACGGTTGCAGCTTCTGATGACGAAAGC AAGTTGGATGATTGTGGTGTATCATCTGTCCCTGAGGAGGGTGCATTGGTTTCTGCAAGA GATGAAACCAAAGATGAAGGAAGGAGGAAACAATTTCAGAGATGCTTCACTTTAGAAGAG GCTACGGATACAATTCTCTTTTGTAGTTCCATTGTTCATGACCTAGCATACAAGGCTGCA ACAGTTGGACTGGAGCGAGAGCAGGAAGCTGAATTCGCTCATGCCCCTCGACCAACAGTG ACCATGGTAGAAAAATTCATTCCAAGGGAAGATGGTTTGTTGAGAGGTCCTCAGAGGCGA ACGACAAGGCGTAAGGTTGAAAGGAAAATACCAGAAGGTGATGGAGAATCCATCACAGAT ACTGCCAGGACAGAAGTAATTACTAAAGAGCCAGCACCTGTACGTTCTTCTTCTGAAATT ACTACATTTGATAGCTTGAAGCCTCCAAAGATGGAGTCGAAGTGCAACTGCACAATTATG TGAATTGTCCATGATTGGAATGTACCAAGGAGACCTGGGATCTAAGTTGAAGCCTATATA TATAGTAGTTTCGTTTTGGGCGCAAACCACTACTGCAAGATGAACCCTGCACCAGTTGAG CGCAGGGGTTTCTTGTGAGAAAATTTTCTGGCCACGGTGCATTTATTTTCTTTTTTTTTT GTTGTAATAGAGGTGCTTGGGCTATTCTTTTGTAAATTCTTCCTTCCCCCTTTTTGCTCT GTATGTTTATTCTACGTTCTGCTTGCCGTGTGATTATATTTTAGTTTGCTAAAGAAATGA AATTTCAGTTCC