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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0238100-02
CDS Infomation

cds chromosome:IRGSP-1.0:12:7630598:7635290:-1 gene:Os12g0238100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SEC10 description:Exocyst complex component Sec10 family protein. (Os12t0238100-01);Similar to Exocyst complex component 5. (Os12t0238100-02)
Sequence

GTAGCATATGACAAGACAAAAGAACTTGCTAAAGAGTTGCAATCTATCAGTTGTGGGGAT
TTGGACATTGAAGGTCTCACTGAATCCATATTTGTTTCCCACAAAGATGAGTACACAGAA
TTTGAACAGGCATCACTCAGACAACAATACCAATCAAAGATGGCTGAATTGAGAGCTGAG
GCCAAGCAGCAATCTGAGTCAACTGGCACAATTGGACGTTCAAATGGAGCGGCTGTGACT
ACATCACTTCAGCAGCAGATATCAGTTACTGTAGTGACTGAATTTGTTCGCTGGAATGAG
GAAGCAATATCTAGATGCACACTGTTGTTTTCTCAGCCTGCTACTGTTGCAGCTAATGTG
AGATCCATATTTGCATGCTTGCTTGATCAAGTAAGCCAATATTTGACTGAAGGGCTTGAC
CATGCTAGAGAGAGTTTAAATCATGCAGCAACTCAACGGGATAGATATGTCATTGGAACA
AGTGTTAGTAGAAGGGTTGCTACTGCTGCTGCTAATGCTGCAGAGGCGGCAGCTGCTGCA
GGTGAGAGTAGCTTTAGATCCTTCATGATTGCTGTGCAGCGTTGTGCTAGCAGTGTGGCT
ATTCTTCAGCAGTACTTCTCAAATACTATATCTCGGCTCCTGCTGCCTGTGGATGGTGCC
CACCCCTCAGCTTGTGAAGATATGGGATCAGCAGTATCTGTTGTTGAGGCTGCTGCCCAC
AAAGGACTGCTACAGTGTATTGATACCGTCATGTCTGAGGTTGAAAGATTGCTGTCTTCA
GAACAGAAGGCTACAGATTATCGAACACCAGATGATGGAGCTGCACCGGATCATCGACCA
ACCAATGCTTGCATAAGAATTGTAGCCTATCTATCTCGTGTTCTCGAGGTTGCATTCAGT
GCTCTAGAAGGTCTCAATAAACAGTCCTTTTTGACTGAGCTGGGAAATCGCTTGCATAAG
GGGCTACTCAATCATTGGCAGAAGTTCACATTTAGTCCCAGTGGTGGGTTACGGCTGAAA
CGTGATATCACTGAGTACGGGGAATTCGTTCGTAGCTTCAATGCCCCATCGATAGATGAA
AAGTTTGAACTGCTTGGAATCATGGCCAATGTATTCATCGTTGCTCCTGAAAGTCTAGCT
TCCTTATTTGAAGGAACCCCCAGTATCCGGAAAGATGCCTTGCGGTTCATTCAACTCAGG
GACGACTATAAGACAGCAAAAATCGCTTCCATGCTAAACAGTATCATGGCTGAATAG

Peptide Sequence

PEP ID

Os12t0238100-02
PEP Infomation

pep chromosome:IRGSP-1.0:12:7630598:7635290:-1 gene:Os12g0238100 transcript:Os12t0238100-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SEC10 description:Exocyst complex component Sec10 family protein. (Os12t0238100-01);Similar to Exocyst complex component 5. (Os12t0238100-02)
Sequence

VAYDKTKELAKELQSISCGDLDIEGLTESIFVSHKDEYTEFEQASLRQQYQSKMAELRAE
AKQQSESTGTIGRSNGAAVTTSLQQQISVTVVTEFVRWNEEAISRCTLLFSQPATVAANV
RSIFACLLDQVSQYLTEGLDHARESLNHAATQRDRYVIGTSVSRRVATAAANAAEAAAAA
GESSFRSFMIAVQRCASSVAILQQYFSNTISRLLLPVDGAHPSACEDMGSAVSVVEAAAH
KGLLQCIDTVMSEVERLLSSEQKATDYRTPDDGAAPDHRPTNACIRIVAYLSRVLEVAFS
ALEGLNKQSFLTELGNRLHKGLLNHWQKFTFSPSGGLRLKRDITEYGEFVRSFNAPSIDE
KFELLGIMANVFIVAPESLASLFEGTPSIRKDALRFIQLRDDYKTAKIASMLNSIMAE

Transcript Sequence

Transcript ID

Os12t0238100-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:7630598:7635290:-1 gene:Os12g0238100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SEC10 description:Exocyst complex component Sec10 family protein. (Os12t0238100-01);Similar to Exocyst complex component 5. (Os12t0238100-02)
Sequence

GGTAGCATATGACAAGACAAAAGAACTTGCTAAAGAGTTGCAATCTATCAGTTGTGGGGA
TTTGGACATTGAAGGTCTCACTGAATCCATATTTGTTTCCCACAAAGATGAGTACACAGA
ATTTGAACAGGCATCACTCAGACAACAATACCAATCAAAGATGGCTGAATTGAGAGCTGA
GGCCAAGCAGCAATCTGAGTCAACTGGCACAATTGGACGTTCAAATGGAGCGGCTGTGAC
TACATCACTTCAGCAGCAGATATCAGTTACTGTAGTGACTGAATTTGTTCGCTGGAATGA
GGAAGCAATATCTAGATGCACACTGTTGTTTTCTCAGCCTGCTACTGTTGCAGCTAATGT
GAGATCCATATTTGCATGCTTGCTTGATCAAGTAAGCCAATATTTGACTGAAGGGCTTGA
CCATGCTAGAGAGAGTTTAAATCATGCAGCAACTCAACGGGATAGATATGTCATTGGAAC
AAGTGTTAGTAGAAGGGTTGCTACTGCTGCTGCTAATGCTGCAGAGGCGGCAGCTGCTGC
AGGTGAGAGTAGCTTTAGATCCTTCATGATTGCTGTGCAGCGTTGTGCTAGCAGTGTGGC
TATTCTTCAGCAGTACTTCTCAAATACTATATCTCGGCTCCTGCTGCCTGTGGATGGTGC
CCACCCCTCAGCTTGTGAAGATATGGGATCAGCAGTATCTGTTGTTGAGGCTGCTGCCCA
CAAAGGACTGCTACAGTGTATTGATACCGTCATGTCTGAGGTTGAAAGATTGCTGTCTTC
AGAACAGAAGGCTACAGATTATCGAACACCAGATGATGGAGCTGCACCGGATCATCGACC
AACCAATGCTTGCATAAGAATTGTAGCCTATCTATCTCGTGTTCTCGAGGTTGCATTCAG
TGCTCTAGAAGGTCTCAATAAACAGTCCTTTTTGACTGAGCTGGGAAATCGCTTGCATAA
GGGGCTACTCAATCATTGGCAGAAGTTCACATTTAGTCCCAGTGGTGGGTTACGGCTGAA
ACGTGATATCACTGAGTACGGGGAATTCGTTCGTAGCTTCAATGCCCCATCGATAGATGA
AAAGTTTGAACTGCTTGGAATCATGGCCAATGTATTCATCGTTGCTCCTGAAAGTCTAGC
TTCCTTATTTGAAGGAACCCCCAGTATCCGGAAAGATGCCTTGCGGTTCATTCAACTCAG
GGACGACTATAAGACAGCAAAAATCGCTTCCATGCTAAACAGTATCATGGCTGAATAGTG
TCACGTCAAGAAGCAGTATGTTTGAGCCGCATTCACACTTTCTGCTGCCTATCAAACTTC
AAGTCTATGAAATGATTCAGTGCCCTCCAAATGATTTTGACCATCCATGTCGCCTGTATA
GCACAGATTCATGATTATGTTAATTCTTTGGGTTTTCTTTGTTCCATTTTTTTTCCCTAT
CCTATTTTGGGCTTGCATTTGTACATGCTGTATCAGTCTCTCTAAATATGACCATTGTAC
CAAGTGGCATAAGTAGTATTTAACGTTCAGTTGTT