Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0230600-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:7130738:7132096:1 gene:Os12g0230600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF1685 family protein. (Os12t0230600-01)
Sequence

ATGTGGAGCTCGGATTCCGAGGCAGACCTCACCGCCGCCGCGGCCGCCATGACCACCACC
ACCACAACCTCCTCCTCCTCCTCCTCATCCTCCTCTCCTTCCTCCTCCCCTCCCCCGCCT
CGCCGTCGCCATCGCCACCACCGCCGCGCCGCCCGCAGGACCCACCCGGTGGAGGCGGAG
GCCGAGGAGGTGTGGCGCGGGGCACAGTGGGAGGCGGCGTGGCCGCGGCGGACGAAGCCG
GTGGTGGTCGCCGAGGACGAGCCGCCGAGCGGCGGCGTCATCGTCGGCGCGTGCACGGCG
GGGGGCGGCGAAGAGGGCGGCGGCGTGGGGCGCGCGCGGAGCCTGACCGACGACGACCTG
GAGGAGCTCAAGGGGTGCGTGGATCTCGGGTTCGGGTTCAGCTACGACGAGATCCCCGAG
CTCTGCGGCACGCTTCCGGCTCTCGAGCTCTGCTACTCCATGAGCCAGCGCTTCCTCGAC
GACCACCCCCAGTCGCACCACTCGCCGCCGCCTCCGCCGCCGCCGATGCCCTCGCCGTCG
ATTCCCAACTGGAAGATCTCCAGCCCCGGAGACAGCCCGGACGAGGTGAAGGCTCGGCTC
AAGTACTGGGCGCAGGCCGTCGCGTGCACCGTCAGGCTCTGCAGCTGA

Peptide Sequence

PEP ID

Os12t0230600-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:7130738:7132096:1 gene:Os12g0230600 transcript:Os12t0230600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF1685 family protein. (Os12t0230600-01)
Sequence

MWSSDSEADLTAAAAAMTTTTTTSSSSSSSSSPSSSPPPPRRRHRHHRRAARRTHPVEAE
AEEVWRGAQWEAAWPRRTKPVVVAEDEPPSGGVIVGACTAGGGEEGGGVGRARSLTDDDL
EELKGCVDLGFGFSYDEIPELCGTLPALELCYSMSQRFLDDHPQSHHSPPPPPPPMPSPS
IPNWKISSPGDSPDEVKARLKYWAQAVACTVRLCS

Transcript Sequence

Transcript ID

Os12t0230600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:7130738:7132096:1 gene:Os12g0230600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF1685 family protein. (Os12t0230600-01)
Sequence

CCCGCGTTTCATTTCCATTTCCACCTCTTCTTCTCCTTCGCGCGAGCGACAAGCGCACTA
GCCGCGGCGGAGATGTGGAGCTCGGATTCCGAGGCAGACCTCACCGCCGCCGCGGCCGCC
ATGACCACCACCACCACAACCTCCTCCTCCTCCTCCTCATCCTCCTCTCCTTCCTCCTCC
CCTCCCCCGCCTCGCCGTCGCCATCGCCACCACCGCCGCGCCGCCCGCAGGACCCACCCG
GTGGAGGCGGAGGCCGAGGAGGTGTGGCGCGGGGCACAGTGGGAGGCGGCGTGGCCGCGG
CGGACGAAGCCGGTGGTGGTCGCCGAGGACGAGCCGCCGAGCGGCGGCGTCATCGTCGGC
GCGTGCACGGCGGGGGGCGGCGAAGAGGGCGGCGGCGTGGGGCGCGCGCGGAGCCTGACC
GACGACGACCTGGAGGAGCTCAAGGGGTGCGTGGATCTCGGGTTCGGGTTCAGCTACGAC
GAGATCCCCGAGCTCTGCGGCACGCTTCCGGCTCTCGAGCTCTGCTACTCCATGAGCCAG
CGCTTCCTCGACGACCACCCCCAGTCGCACCACTCGCCGCCGCCTCCGCCGCCGCCGATG
CCCTCGCCGTCGATTCCCAACTGGAAGATCTCCAGCCCCGGAGACAGCCCGGACGAGGTG
AAGGCTCGGCTCAAGTACTGGGCGCAGGCCGTCGCGTGCACCGTCAGGCTCTGCAGCTGA
ACACCACCACACCACCATGATCATTCCACCAACACATTTTACAGCCAAGCCCAAGAACAT
GAGCATCAACAAACCATGTCAAGAACATGATCGATTCCTCCAATCGGCTGCGCGGATGAT
CAATCGATGGATGGATGGATGGGGAATGCAGTGAAGATGACATTGATGATCATTGTGGTT
GGATCTTGCTTGGGAGGAGAAGGTGACCAGATCAGCTAGTAGCTGTATGTGTGAGCGACG
AGCGTACATGCAGTTGAGAGAGTGTGGTTCAGATTAGTTGGGAATAATTGTGTCTGGTTG
CTGGTTCTCTCTCTCTCTTCTGTGCCAGGCTGCCAGAATCAAGCTACAGCTTGTCATCTC
CAGCAACTAAATGTAATCAAAATAATGTAATCCTAGTTGCCAATTGGGAGAACAAAGTAA
ATATGGATGGATGAATAAATAAATGTGTTCATC