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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0227500-00
CDS Infomation

cds chromosome:IRGSP-1.0:12:6945206:6948234:1 gene:Os12g0227500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Beta-glucosidase aggregating factor. (Os12t0227500-00)
Sequence

ATGGCCTCCTACTACGAAATCACCTCTCGTGGCGCACTCATCAAGGGCAGGGAGTTCAAC
TTCTCCAACCTCTACCTCTACCACATCTACAATAGCTCGGAACCGAACCAGCAGCAGATC
ATAGACAACGTTTCTTCCACTGCCATGGGTGGGCTGACCGTCAACAATTGGACGGTGTAC
GATGGAGTTGCGAGCGATGCGACGCTTGTTGCCCGAGGGCAGGGCCTGCATACCTACGCT
GGCAACTGGCATTGCTCCTTCACCTTGGTTTTCGAGGATGAAAGGTTTAACGGATCCACC
CTTGAGGTGAAGGGGATATTTGAAGAGACTCATGACTGGGCTATTGTTGGGGGAACAGGC
GAGTTCGCTATGGCATCTGGTGTCATAAAGAAAACGGTGTATGAGCGAACACCCGAGGGG
ACAATCATTGAACTCACGATCCGTGGGTTTTGCCCCGATTTTTAA

Peptide Sequence

PEP ID

Os12t0227500-00
PEP Infomation

pep chromosome:IRGSP-1.0:12:6945206:6948234:1 gene:Os12g0227500 transcript:Os12t0227500-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Beta-glucosidase aggregating factor. (Os12t0227500-00)
Sequence

MASYYEITSRGALIKGREFNFSNLYLYHIYNSSEPNQQQIIDNVSSTAMGGLTVNNWTVY
DGVASDATLVARGQGLHTYAGNWHCSFTLVFEDERFNGSTLEVKGIFEETHDWAIVGGTG
EFAMASGVIKKTVYERTPEGTIIELTIRGFCPDF

Transcript Sequence

Transcript ID

Os12t0227500-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:6945206:6948234:1 gene:Os12g0227500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Beta-glucosidase aggregating factor. (Os12t0227500-00)
Sequence

CCAAGCAGAAGCTAGAGACACATCTAATCATCTTCATAAAACCTTGATCTAGCTAGCTCC
CAAACCATACATGGCCTCCTACTACGAAATCACCTCTCGTGGCGCACTCATCAAGGGCAG
GGAGTTCAACTTCTCCAACCTCTACCTCTACCACATCTACAATAGCTCGGAACCGAACCA
GCAGCAGATCATAGACAACGTTTCTTCCACTGCCATGGGTGGGCTGACCGTCAACAATTG
GACGGTGTACGATGGAGTTGCGAGCGATGCGACGCTTGTTGCCCGAGGGCAGGGCCTGCA
TACCTACGCTGGCAACTGGCATTGCTCCTTCACCTTGGTTTTCGAGGATGAAAGGTTTAA
CGGATCCACCCTTGAGGTGAAGGGGATATTTGAAGAGACTCATGACTGGGCTATTGTTGG
GGGAACAGGCGAGTTCGCTATGGCATCTGGTGTCATAAAGAAAACGGTGTATGAGCGAAC
ACCCGAGGGGACAATCATTGAACTCACGATCCGTGGGTTTTGCCCCGATTTTTAACCTAT
TTGAAGGTAACATTTGGTCGGCAGAATGCAGCCCTTTTGGCTCCCACTGTCAAATAAACT
ACAGTGTTGTAGGCTTCTTTTGTCGTGGTGGGAAGTGCCTCAATGCAGTTGGCATCAGCG
TCCACCCTGTCTAACCTGTCAAAATTAGCTTCCCGTGTTTAAGTGTGTTTTTTGTAATGA
ATAAATATGTTAGGGGGTCCTCCCTTTCATTCATGTAGTGATGAGTGATGTTCTGTAGCT
GGAGTGCGTATGTCGGAATTTGCAGTCCTTCTGTCAGGGTTTCAGTCTTGCAGATTGTTG
TATACTCCCTCCGTCCTAAAAAAAGGCAAACCCTGGGTTTCCGTGTCC