Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0226700-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:6911276:6913929:1 gene:Os12g0226700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Allyl alcohol dehydrogenase. (Os12t0226700-01)
Sequence

ATGGCGGCGGCCACAGTAAGCAACAAGAGGGTGATCCTAAAACGATACGTGACTGGGCTT
CTCTCGGAGGATGATATGGAGGTGGTGACGGTGGAGGCGCCGCCGCTGGATGTGCCAACG
GGGTCGAAGGGGGTGGTGGTGAAGAATCTGTATGTTTCGTGTGACCCTTACATGCGCAAT
CGGATGACCCACCACGAGTTGCCCAGCTACATCCCGGATTTTGTCCCAGGGGAGGTTTTG
GAAAATTTTGGCGTGATGAAGGTGATATCATCTGGGCACCTGGATTTCAAGGCAGGTGAT
CTTGTTTGGGGGATGACCGGATGGGAAGAATATACCGTGATCAACAATCCAGAATCGCTT
TTCAAGATCAATCACCCTGAACTTCCTCTATCCTACTACACTGGTATTCTAGGAATGCCA
GGGCTTACCGCCTATGCTGGATTCTTTGACGTGCCCAAGCCAAAGAAAGGTGAATATGTC
TTTATCTCAGGAGCATCTGGTGCTGTAGGTCAGGTTGTTGGGCAGCTTGCTAAGATCACA
GGTTGCTACGTGATCGGCAGTGCTGGTTATGACGAAAAGGTCAACTTATTGAAGAGTAAG
TTTGGCTTTGATGATGCTTTCAACTACAAGAAGGAACAAGATCTTGAGGCAGCCCTAAGG
AGATATTTTCCAGAGGGTATTGATATCTACTATGAGAATGTGGGCGGCAAAATGCTAGAC
GCAGTACTACCTAATATGAGTCTGGGTGGTCGGATTGTGGCATGTGGGATGATCTCGCAG
TACAACCTGGAGCAGCCCGAGGGGGTGCGAAACCTGTACTACATCGTTACCAAGCGCCTG
CGCATGGAGGGCTTCCATGTGTTTGACTACTATGACAGGTACTACCGGTTCGAGGAGGAG
ATGGCTGGGTACCTGAAGGAAGAAAAGGTGTCATACGTAGAAGATGTCGTTGAGGGGCTC
GACACAGCACCGGCAGCGCTCATCAGGCTCTTCACTGGCCGTAGCGTTGGAAAACAGCTC
GTCGCCGTTGCACGCGAGTGA

Peptide Sequence

PEP ID

Os12t0226700-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:6911276:6913929:1 gene:Os12g0226700 transcript:Os12t0226700-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Allyl alcohol dehydrogenase. (Os12t0226700-01)
Sequence

MAAATVSNKRVILKRYVTGLLSEDDMEVVTVEAPPLDVPTGSKGVVVKNLYVSCDPYMRN
RMTHHELPSYIPDFVPGEVLENFGVMKVISSGHLDFKAGDLVWGMTGWEEYTVINNPESL
FKINHPELPLSYYTGILGMPGLTAYAGFFDVPKPKKGEYVFISGASGAVGQVVGQLAKIT
GCYVIGSAGYDEKVNLLKSKFGFDDAFNYKKEQDLEAALRRYFPEGIDIYYENVGGKMLD
AVLPNMSLGGRIVACGMISQYNLEQPEGVRNLYYIVTKRLRMEGFHVFDYYDRYYRFEEE
MAGYLKEEKVSYVEDVVEGLDTAPAALIRLFTGRSVGKQLVAVARE

Transcript Sequence

Transcript ID

Os12t0226700-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:6911276:6913929:1 gene:Os12g0226700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Allyl alcohol dehydrogenase. (Os12t0226700-01)
Sequence

AAGGAGGAGGAGAGCGCGGCGGCGATCGATGGCGGCGGCCACAGTAAGCAACAAGAGGGT
GATCCTAAAACGATACGTGACTGGGCTTCTCTCGGAGGATGATATGGAGGTGGTGACGGT
GGAGGCGCCGCCGCTGGATGTGCCAACGGGGTCGAAGGGGGTGGTGGTGAAGAATCTGTA
TGTTTCGTGTGACCCTTACATGCGCAATCGGATGACCCACCACGAGTTGCCCAGCTACAT
CCCGGATTTTGTCCCAGGGGAGGTTTTGGAAAATTTTGGCGTGATGAAGGTGATATCATC
TGGGCACCTGGATTTCAAGGCAGGTGATCTTGTTTGGGGGATGACCGGATGGGAAGAATA
TACCGTGATCAACAATCCAGAATCGCTTTTCAAGATCAATCACCCTGAACTTCCTCTATC
CTACTACACTGGTATTCTAGGAATGCCAGGGCTTACCGCCTATGCTGGATTCTTTGACGT
GCCCAAGCCAAAGAAAGGTGAATATGTCTTTATCTCAGGAGCATCTGGTGCTGTAGGTCA
GGTTGTTGGGCAGCTTGCTAAGATCACAGGTTGCTACGTGATCGGCAGTGCTGGTTATGA
CGAAAAGGTCAACTTATTGAAGAGTAAGTTTGGCTTTGATGATGCTTTCAACTACAAGAA
GGAACAAGATCTTGAGGCAGCCCTAAGGAGATATTTTCCAGAGGGTATTGATATCTACTA
TGAGAATGTGGGCGGCAAAATGCTAGACGCAGTACTACCTAATATGAGTCTGGGTGGTCG
GATTGTGGCATGTGGGATGATCTCGCAGTACAACCTGGAGCAGCCCGAGGGGGTGCGAAA
CCTGTACTACATCGTTACCAAGCGCCTGCGCATGGAGGGCTTCCATGTGTTTGACTACTA
TGACAGGTACTACCGGTTCGAGGAGGAGATGGCTGGGTACCTGAAGGAAGAAAAGGTGTC
ATACGTAGAAGATGTCGTTGAGGGGCTCGACACAGCACCGGCAGCGCTCATCAGGCTCTT
CACTGGCCGTAGCGTTGGAAAACAGCTCGTCGCCGTTGCACGCGAGTGAGACAACGCTGC
TTGGCATGGGAGTTGGCATTACGTAATAGTACTAGTTCAGAATTCAGAAATTGGGGGCTT
TCCAGTTTGGCCAATACCTAGTTAGTACATCTGCTTTTCTCAAGTCAGACAGGAGAAAAC
AATGATATTGACGGGAGTACTTCCCCAAAATGACTTTTTTTTATTT