Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0225900-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:6869987:6872291:1 gene:Os12g0225900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Allyl alcohol dehydrogenase. (Os12t0225900-01)
Sequence

ATGGCGGCAGTGGTGACCAACAGGAGGGTGATCCTGAAGAGGTACGTGACAGGGCTCCCA
TCGGAGGACGACATGGAGGTGGTGACGGCGAAGACGACGCTGGCCGTGCCGGCTGGGTCG
GAGGCGGTGATGGTGAAGAACCTGTACGTCTCGTGTGACCCTTACATGCGTGGCCGGATG
ACCCGTCACGAGGTGCCCAGCTACGTTCCCGACTACGTACCAGGAGAGGTTATCACTAAT
TGTGGCGTGATGAAGGTGGTATCATCTGGGCACCCGGATTTCAAGGATGGAGACCTTGTT
TGGGGAGTAACCGGATGGGAAGAATACACCCTGGTTAACAATCCCAAGCCTTATTTGCAT
AAGATCAATTACCCTGAATTTCCTCTATCTTACTACACCGGTGTTCTAGGAATAGCTGGG
CTTACTGCCTATGGTGGGTTCTTTGAGGTCTCCAAGCCTAAGAAAGGCGACTATGTTTTC
GTCTCCGCGGCATCCGGTGCCGTAGGTCAGATTGTTGGGCAACTGGCTAAGATCACAGGC
TGCTATGTGGTTGGCAGTGCTGGTTCTGATGAGAAGGTCAAGCTGCTCAAAACTAAGTTT
GGCTTTCATGACGCGTTCAACTACAAGAAGGAGCTGGACCTGGAGGGAGCCCTTAAAAGG
TGCTTCCCGGACGGCATCGACATCTACTTTGATAACGTGGGTGGTGCAATGTTGGACGCC
GTGCTGCCGAACATGCGTATCGGCGGCAAGATAACGATATGTGGGATGATCTCGCAATAT
AACCTGGAGCGGCCAGACGGGGTGCGGAACCTCTTCTACTTATTCGCCAAGAGCCTACGG
ATGGAGGGGTTCCTGGTGAGCAACTACATTGCAATATACCACCGGTATGAGAAGGAGATG
GCAGGATACCTGAGGGAAGGAAAGGTGGTGTATGTGGAGGACATCGTTGAGGGGCTCGAG
GCGGCACCGGCAGCTCTCATTGGGCTATTCACTGGCCGCAATGTCGGCAAGCAGCTGGTC
ACCATTGCACGGGAGTGA

Peptide Sequence

PEP ID

Os12t0225900-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:6869987:6872291:1 gene:Os12g0225900 transcript:Os12t0225900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Allyl alcohol dehydrogenase. (Os12t0225900-01)
Sequence

MAAVVTNRRVILKRYVTGLPSEDDMEVVTAKTTLAVPAGSEAVMVKNLYVSCDPYMRGRM
TRHEVPSYVPDYVPGEVITNCGVMKVVSSGHPDFKDGDLVWGVTGWEEYTLVNNPKPYLH
KINYPEFPLSYYTGVLGIAGLTAYGGFFEVSKPKKGDYVFVSAASGAVGQIVGQLAKITG
CYVVGSAGSDEKVKLLKTKFGFHDAFNYKKELDLEGALKRCFPDGIDIYFDNVGGAMLDA
VLPNMRIGGKITICGMISQYNLERPDGVRNLFYLFAKSLRMEGFLVSNYIAIYHRYEKEM
AGYLREGKVVYVEDIVEGLEAAPAALIGLFTGRNVGKQLVTIARE

Transcript Sequence

Transcript ID

Os12t0225900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:6869987:6872291:1 gene:Os12g0225900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Allyl alcohol dehydrogenase. (Os12t0225900-01)
Sequence

TATATCTCGTGGTTTGTGGGTTCTTTTCACTTGTTCAGTGTTCAGAAGCATAAGCAGTAC
GTGATCAGAAGCAAAGCTAGCGTGCGTTTGCAATGGCGGCAGTGGTGACCAACAGGAGGG
TGATCCTGAAGAGGTACGTGACAGGGCTCCCATCGGAGGACGACATGGAGGTGGTGACGG
CGAAGACGACGCTGGCCGTGCCGGCTGGGTCGGAGGCGGTGATGGTGAAGAACCTGTACG
TCTCGTGTGACCCTTACATGCGTGGCCGGATGACCCGTCACGAGGTGCCCAGCTACGTTC
CCGACTACGTACCAGGAGAGGTTATCACTAATTGTGGCGTGATGAAGGTGGTATCATCTG
GGCACCCGGATTTCAAGGATGGAGACCTTGTTTGGGGAGTAACCGGATGGGAAGAATACA
CCCTGGTTAACAATCCCAAGCCTTATTTGCATAAGATCAATTACCCTGAATTTCCTCTAT
CTTACTACACCGGTGTTCTAGGAATAGCTGGGCTTACTGCCTATGGTGGGTTCTTTGAGG
TCTCCAAGCCTAAGAAAGGCGACTATGTTTTCGTCTCCGCGGCATCCGGTGCCGTAGGTC
AGATTGTTGGGCAACTGGCTAAGATCACAGGCTGCTATGTGGTTGGCAGTGCTGGTTCTG
ATGAGAAGGTCAAGCTGCTCAAAACTAAGTTTGGCTTTCATGACGCGTTCAACTACAAGA
AGGAGCTGGACCTGGAGGGAGCCCTTAAAAGGTGCTTCCCGGACGGCATCGACATCTACT
TTGATAACGTGGGTGGTGCAATGTTGGACGCCGTGCTGCCGAACATGCGTATCGGCGGCA
AGATAACGATATGTGGGATGATCTCGCAATATAACCTGGAGCGGCCAGACGGGGTGCGGA
ACCTCTTCTACTTATTCGCCAAGAGCCTACGGATGGAGGGGTTCCTGGTGAGCAACTACA
TTGCAATATACCACCGGTATGAGAAGGAGATGGCAGGATACCTGAGGGAAGGAAAGGTGG
TGTATGTGGAGGACATCGTTGAGGGGCTCGAGGCGGCACCGGCAGCTCTCATTGGGCTAT
TCACTGGCCGCAATGTCGGCAAGCAGCTGGTCACCATTGCACGGGAGTGATGTCGTTGGT
TGCATTGGTATGTACTACCTCTGTCCCGAAATATTACAATTTTTAGCTACGAATCTGGAC
ATATAGGTGACCAGATTCATAGCTAAAAATTGCTATATTTTGGGACGGAGGTAGTACGTA
CTAACCATACTTATTTATGAAATCTGAAATGGATGTCTTGTTTGTTTTGTCGGGTTCAGA
AATATGAGATAAAATATTGTGCCGGGCT