Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0210800-01
CDS Infomation	cds chromosome:IRGSP-1.0:12:5801534:5807232:1 gene:Os12g0210800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 3-deoxy-D-manno-2-octulosonic acid-8-phosphate (EC 4.1.2.16) (Fragment). (Os12t0210800-01);Similar to 2-dehydro-3-deoxyphosphooctonate aldolase. (Os12t0210800-02)
Sequence	ATGGACGCTTCGTCGGTGGCGCTCTACGGCCAGCTCAAGGCTGCTCAACCATTCTTCTTG TTAGCTGGGCCTAATGTGATTGAATCAGAGGAGCATGTCCTGAAGATGGCAAAACACATC AAAGGCATCACAACCAAGCTTGGTCTGCCACTTGTGTTCAAGTCCAGCTTTGATAAAGCA AATCGTACATCATCAAAATCCTTCCGTGGTCCTGGTCTGGAGGAAGGCCTGAAGATACTT GAAAAAGTGAAAGCAACATATGACATTCCAGTGGTCACTGATGTGCATGAAAGCCACCAG TGTGAAGCCGTTGGAAGAGTGGCCGACATCATACAAATTCCAGCTTTCCTCTGTCGCCAG ACTGATCTTCTAGTGGCTGCTGCCAAGACTGGAAAAATTATCAACATCAAGAAAGGACAA TTCTGTGCTCCTTCTGTTATGGCCAACTCTGCAGAGAAAATCAGACTTGCTGGAAATCAA AATGTTATGGTCTGTGAGCGTGGCACCATGTTTGGCTACAATGATCTAATTGTTGATCCA AGGAATTTTGAGTGGCTGAGAGAAGCTAATTGTCCAGTTGTAGCTGATGTAACGCATGCT CTACAACAGCCTGCTGGAAAAAAGCTTGATGGTGGAGGTGTTGCAAGTGGGGGCTTACGA GAACTAATACCATGCATCGCAAGGACTTCTGTTGCTGTCGGAGTTGATGGTATTTTCATG GAGGTACATGATGATCCCTTGAACGCACCTTGTGATGGCCCAACTCAATGGCCACTGCGC AATTTGGAGGAGCTATTAGAGGAGCTGATTGCAATTGCTCGAGTCACCAAGGGAAAGAAG CCACTCAAGATCGATCTCACCCCCTTCAAAGAATAA

Peptide Sequence

PEP ID	Os12t0210800-01
PEP Infomation	pep chromosome:IRGSP-1.0:12:5801534:5807232:1 gene:Os12g0210800 transcript:Os12t0210800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 3-deoxy-D-manno-2-octulosonic acid-8-phosphate (EC 4.1.2.16) (Fragment). (Os12t0210800-01);Similar to 2-dehydro-3-deoxyphosphooctonate aldolase. (Os12t0210800-02)
Sequence	MDASSVALYGQLKAAQPFFLLAGPNVIESEEHVLKMAKHIKGITTKLGLPLVFKSSFDKA NRTSSKSFRGPGLEEGLKILEKVKATYDIPVVTDVHESHQCEAVGRVADIIQIPAFLCRQ TDLLVAAAKTGKIINIKKGQFCAPSVMANSAEKIRLAGNQNVMVCERGTMFGYNDLIVDP RNFEWLREANCPVVADVTHALQQPAGKKLDGGGVASGGLRELIPCIARTSVAVGVDGIFM EVHDDPLNAPCDGPTQWPLRNLEELLEELIAIARVTKGKKPLKIDLTPFKE

Transcript Sequence

Transcript ID	Os12t0210800-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:5801534:5807232:1 gene:Os12g0210800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 3-deoxy-D-manno-2-octulosonic acid-8-phosphate (EC 4.1.2.16) (Fragment). (Os12t0210800-01);Similar to 2-dehydro-3-deoxyphosphooctonate aldolase. (Os12t0210800-02)
Sequence	TATCCCACTCGCCAATCTCGATTCCCTCCTCCGCTCTACCTCGCCGGAGTTCACCCTGGT CAGTGGCTCCGCCGCCGCATTCCTCGTCTTCTTGGTGGGGATTTTTTTTCCTCTTGGAGC GAGTGGTGAGTGAGGCGGTTCTTTGGTGTTCTTCTTTTTGTTGCCTCCTGCAGTGTGGGA CTGGGAGCGGCGGCGGCGTCGGAGGCAATGGACGCTTCGTCGGTGGCGCTCTACGGCCAG CTCAAGGCTGCTCAACCATTCTTCTTGTTAGCTGGGCCTAATGTGATTGAATCAGAGGAG CATGTCCTGAAGATGGCAAAACACATCAAAGGCATCACAACCAAGCTTGGTCTGCCACTT GTGTTCAAGTCCAGCTTTGATAAAGCAAATCGTACATCATCAAAATCCTTCCGTGGTCCT GGTCTGGAGGAAGGCCTGAAGATACTTGAAAAAGTGAAAGCAACATATGACATTCCAGTG GTCACTGATGTGCATGAAAGCCACCAGTGTGAAGCCGTTGGAAGAGTGGCCGACATCATA CAAATTCCAGCTTTCCTCTGTCGCCAGACTGATCTTCTAGTGGCTGCTGCCAAGACTGGA AAAATTATCAACATCAAGAAAGGACAATTCTGTGCTCCTTCTGTTATGGCCAACTCTGCA GAGAAAATCAGACTTGCTGGAAATCAAAATGTTATGGTCTGTGAGCGTGGCACCATGTTT GGCTACAATGATCTAATTGTTGATCCAAGGAATTTTGAGTGGCTGAGAGAAGCTAATTGT CCAGTTGTAGCTGATGTAACGCATGCTCTACAACAGCCTGCTGGAAAAAAGCTTGATGGT GGAGGTGTTGCAAGTGGGGGCTTACGAGAACTAATACCATGCATCGCAAGGACTTCTGTT GCTGTCGGAGTTGATGGTATTTTCATGGAGGTACATGATGATCCCTTGAACGCACCTTGT GATGGCCCAACTCAATGGCCACTGCGCAATTTGGAGGAGCTATTAGAGGAGCTGATTGCA ATTGCTCGAGTCACCAAGGGAAAGAAGCCACTCAAGATCGATCTCACCCCCTTCAAAGAA TAATCTGGTCCAGTTGGTAGGAAATAATGGGCACACTTGCTTGGTTGATAGTTTTGACCA GCATATATTTACCTGTTTGGATGAATTGCTCGTTGTATGTCATACATTCGTTTATCGGTG ACTGTTGTCTGTATTGTACTGCCTATACAATAAAGATCATTGTTTTACCC