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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0208900-00
CDS Infomation

cds chromosome:IRGSP-1.0:12:5674410:5676438:1 gene:Os12g0208900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:zinc finger homeodomain class homeobox transcription factor 3 description:Similar to ZF-HD protein dimerisation region containing protein, expressed. (Os12t0208900-00)
Sequence

ATGGATCTTTCTGGGGCGCAGGGCGAGCTGCCGTTGCCAATGCACGCCGCGGCGTCGCCG
TACCTCGGCTTGCACCATGACCACCACCACCAACTGCTCGGCGTCGGCGCGCACCCCCGC
GGCCACGGCCACCACCACCACCACCTCCTGGTGGCGGCGCTGCCGCCGCCGACGCGGATG
GTGATGCCGCTGAGCGCCATGCACACGTCGGAGTCGGACGACGCCGCGGCGCGCCCCGGC
GGCGGCGCGGCGGCGAGGAAGCGGTTCCGGACCAAGTTCACGGCGGAGCAGAAGGCGCGG
ATGCTGGGGTTCGCCGAGGAGGTCGGGTGGCGGCTGCAGAAGCTGGAGGACGCCGTCGTG
CAGCGCTTCTGCCAGGAGGTCGGCGTCAAGCGCCGCGTCCTCAAGGTCTGGATGCACAAC
AACAAGCACACCCTCGCCCGCCGCCACCTCCACCCCTCCCCCGCCGCCGCCGCCGGAGAC
GACGACGACGACGGCGCGCCGCCGCCGCACCCCGACCCCCGGCGGCGCGAGCTCGCCGCC
GCCGCCGCACCACCTCCGGCTCCAGTAACCCAACACATCAAGAAATCCGTTGACAACAAA
AGCCTCATTTCTAGCTTAGCTGCATTGCATTGCATTGCTCTACTACTGTTCCATCAAATT
GATGCTTAA

Peptide Sequence

PEP ID

Os12t0208900-00
PEP Infomation

pep chromosome:IRGSP-1.0:12:5674410:5676438:1 gene:Os12g0208900 transcript:Os12t0208900-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:zinc finger homeodomain class homeobox transcription factor 3 description:Similar to ZF-HD protein dimerisation region containing protein, expressed. (Os12t0208900-00)
Sequence

MDLSGAQGELPLPMHAAASPYLGLHHDHHHQLLGVGAHPRGHGHHHHHLLVAALPPPTRM
VMPLSAMHTSESDDAAARPGGGAAARKRFRTKFTAEQKARMLGFAEEVGWRLQKLEDAVV
QRFCQEVGVKRRVLKVWMHNNKHTLARRHLHPSPAAAAGDDDDDGAPPPHPDPRRRELAA
AAAPPPAPVTQHIKKSVDNKSLISSLAALHCIALLLFHQIDA

Transcript Sequence

Transcript ID

Os12t0208900-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:5674410:5676438:1 gene:Os12g0208900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:zinc finger homeodomain class homeobox transcription factor 3 description:Similar to ZF-HD protein dimerisation region containing protein, expressed. (Os12t0208900-00)
Sequence

ACAATCTCTTTGTTTTCTTGTAATTCCAACCACTTTGCAGGGCTTGTGCTTGTGCCCTTG
CTAGTTGCTTCTCATTGCTGCAATGGTGGAAGGAGAGAACATTTGAGCTTTCTCACTCAC
TCATCACCATGGCCTTGCTCCCTCTTTGCCCTCCTGATTAGCTTAGTTCTTGAGAGACAC
ACACACACAAACACTGCAAGCAAGCTCGGGTAGCTTCTGGAAGCTTCTGCTGTGTGTCCG
CCATTGCAAATGGATCTTTCTGGGGCGCAGGGCGAGCTGCCGTTGCCAATGCACGCCGCG
GCGTCGCCGTACCTCGGCTTGCACCATGACCACCACCACCAACTGCTCGGCGTCGGCGCG
CACCCCCGCGGCCACGGCCACCACCACCACCACCTCCTGGTGGCGGCGCTGCCGCCGCCG
ACGCGGATGGTGATGCCGCTGAGCGCCATGCACACGTCGGAGTCGGACGACGCCGCGGCG
CGCCCCGGCGGCGGCGCGGCGGCGAGGAAGCGGTTCCGGACCAAGTTCACGGCGGAGCAG
AAGGCGCGGATGCTGGGGTTCGCCGAGGAGGTCGGGTGGCGGCTGCAGAAGCTGGAGGAC
GCCGTCGTGCAGCGCTTCTGCCAGGAGGTCGGCGTCAAGCGCCGCGTCCTCAAGGTCTGG
ATGCACAACAACAAGCACACCCTCGCCCGCCGCCACCTCCACCCCTCCCCCGCCGCCGCC
GCCGGAGACGACGACGACGACGGCGCGCCGCCGCCGCACCCCGACCCCCGGCGGCGCGAG
CTCGCCGCCGCCGCCGCACCACCTCCGGCTCCAGTAACCCAACACATCAAGAAATCCGTT
GACAACAAAAGCCTCATTTCTAGCTTAGCTGCATTGCATTGCATTGCTCTACTACTGTTC
CATCAAATTGATGCTTAATCCTCTCTCTCTCT