Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0198700-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:5116395:5118098:-1 gene:Os12g0198700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Jasmonate-induced protein. (Os12t0198700-01)
Sequence

ATGTCTGCTAGCAAGCTGCAATTCACCCCATGCAGCACACCCATTCAGGGCAATGAGATC
AACTTTAGCAAACTCTACCTGCACCACACGCCGGCTGGTCCAAGACCAAACCAGTCCGGG
GTCACAAGCACAAACAAGGAAACCGGGTTGGGTTCCTTGGTTGTTAACAACTGGCAGGTA
TACGACGGAATCGGCTGTGACGCCAAGGTTGTTGCCCATGCACAAGGCCTGCACGTTTAT
GCCGGTAACTGGCACAACTCCTTCACCCTAGTGTTTGAGGATGAAAGGTTCAAGGGTTCC
ACTCTTGAGGTGATGGGAATAGTTGTTGAACAAGGTGAATGGGCTATTGTCGGGGGCACG
GGACAATTTGCTATGGCAAATGGTGTAATCTTTAAAAAGTTCCATGAACAAAAAAAAGAA
GGAAATATTATGGAACTCACTATCAAGGGATTTTGCCCTGTCTTGAAAGGGTCACCGTCA
CAGGGCCTTGTCACCAAGATTGGGCCTTGGGGTGGAATTGATGGAGGCAGAGCTCAAGAC
ATTACAGCTACTCCAAAGCGTCTAGAATCCATTACAATACACAGCGGCTGGACTATTGAT
TCGATCTCATTTATTTACTTTGACCAAGCTGGAGAGAAGCACAGAGCAGGTCCATGGGGT
GGTCCTGGTGGGGATCCTTGCACGATTGAATTTGGCAGTTCAGAGTTTCTCAAGGAGGTT
TCTGGAACGTTTGGCCCATATGAAGGCTGGAAAGTTATAAGATCTATTAAATTTGTCACC
AATAAGAAAACATATGGTCCATTTGGACGACAGGAAGGAACCCCTTTTAGCGTCCCGGTG
CAGAATAACTCCACTATAGTGGGCTTCTTTGGACGCAGCGGGAAGTACCTCGACACAGTT
GGCATCTACGTGCATCCGAGATAA

Peptide Sequence

PEP ID

Os12t0198700-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:5116395:5118098:-1 gene:Os12g0198700 transcript:Os12t0198700-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Jasmonate-induced protein. (Os12t0198700-01)
Sequence

MSASKLQFTPCSTPIQGNEINFSKLYLHHTPAGPRPNQSGVTSTNKETGLGSLVVNNWQV
YDGIGCDAKVVAHAQGLHVYAGNWHNSFTLVFEDERFKGSTLEVMGIVVEQGEWAIVGGT
GQFAMANGVIFKKFHEQKKEGNIMELTIKGFCPVLKGSPSQGLVTKIGPWGGIDGGRAQD
ITATPKRLESITIHSGWTIDSISFIYFDQAGEKHRAGPWGGPGGDPCTIEFGSSEFLKEV
SGTFGPYEGWKVIRSIKFVTNKKTYGPFGRQEGTPFSVPVQNNSTIVGFFGRSGKYLDTV
GIYVHPR

Transcript Sequence

Transcript ID

Os12t0198700-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:5116395:5118098:-1 gene:Os12g0198700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Jasmonate-induced protein. (Os12t0198700-01)
Sequence

ACATCCCTCACAGCCACAGCCATAGACCATAGTACTACACCACATCTTCTCCCCTACCCA
CCAGCAGTTCCCAGCCATGTCTGCTAGCAAGCTGCAATTCACCCCATGCAGCACACCCAT
TCAGGGCAATGAGATCAACTTTAGCAAACTCTACCTGCACCACACGCCGGCTGGTCCAAG
ACCAAACCAGTCCGGGGTCACAAGCACAAACAAGGAAACCGGGTTGGGTTCCTTGGTTGT
TAACAACTGGCAGGTATACGACGGAATCGGCTGTGACGCCAAGGTTGTTGCCCATGCACA
AGGCCTGCACGTTTATGCCGGTAACTGGCACAACTCCTTCACCCTAGTGTTTGAGGATGA
AAGGTTCAAGGGTTCCACTCTTGAGGTGATGGGAATAGTTGTTGAACAAGGTGAATGGGC
TATTGTCGGGGGCACGGGACAATTTGCTATGGCAAATGGTGTAATCTTTAAAAAGTTCCA
TGAACAAAAAAAAGAAGGAAATATTATGGAACTCACTATCAAGGGATTTTGCCCTGTCTT
GAAAGGGTCACCGTCACAGGGCCTTGTCACCAAGATTGGGCCTTGGGGTGGAATTGATGG
AGGCAGAGCTCAAGACATTACAGCTACTCCAAAGCGTCTAGAATCCATTACAATACACAG
CGGCTGGACTATTGATTCGATCTCATTTATTTACTTTGACCAAGCTGGAGAGAAGCACAG
AGCAGGTCCATGGGGTGGTCCTGGTGGGGATCCTTGCACGATTGAATTTGGCAGTTCAGA
GTTTCTCAAGGAGGTTTCTGGAACGTTTGGCCCATATGAAGGCTGGAAAGTTATAAGATC
TATTAAATTTGTCACCAATAAGAAAACATATGGTCCATTTGGACGACAGGAAGGAACCCC
TTTTAGCGTCCCGGTGCAGAATAACTCCACTATAGTGGGCTTCTTTGGACGCAGCGGGAA
GTACCTCGACACAGTTGGCATCTACGTGCATCCGAGATAACATGTCAAAATCAGTTTCCC
ATGTTTGACTTTGAAGTGTGTTTTCTATAATAAATAAATATGATGGGATCCTCCCTTTCA
TTCCAGTAGTGATGAGGGATCCTTTCTAGCTGAAGTGTGTTTACTTCTGAATTTGCAGTC
CTTCTGTCGGTGGTTTCAGTTTGCAATGCATTGTATGCATCAATAAGGATCTTCGTTGAA
GGTTGGTTTGGTGAATAAAGTCGTCATTCAGTTAGC