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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0198000-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:5070769:5071512:-1 gene:Os12g0198000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF538 family protein. (Os12t0198000-01)
Sequence

ATGGCCGCCACCCACCCCCTCCTCCTCCTCCTCCTCGCCGCCGCCGCCGTCGTCGTCCTC
GTCGTAGCGGCGACACCGGCGGCGGCGAGCGGCAACGGGACGTCGACGCCGACGGCGTAC
GAGATGCTGGAGAGGTACGACTTCCCGCGGGGGATCCTGCCGGTGGGGGTGGAGGGGTAC
GAGCTCCGGGAGGACGGGAGCTTCGAGGTGTACTTCCCGCGGGACTGCGAGTTCATGCTG
GCGAGGACGTGGCTGGTCCGGTACGGCGCCCGCATCGCCGGCGCCGCCGCCTCCGGCCGG
CTCACGTCGCTCCAGGGCGTCTACGTCAAGGTGCTCTTCGTCTGGCTCCCCGTCGGCGAG
GTCGACCGCTCCGGCGACACTCTCAGCTTCTACATCGGCCCCGTCTCCACCTCCTTCCCC
CTCTCCGACTTCGCCCACAGCCCGCACTGCCGCGGTTACGACCACCTCCCCGCCGCCGCC
GCCGCCGCCGCTGCCGCCTTGTGA

Peptide Sequence

PEP ID

Os12t0198000-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:5070769:5071512:-1 gene:Os12g0198000 transcript:Os12t0198000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF538 family protein. (Os12t0198000-01)
Sequence

MAATHPLLLLLLAAAAVVVLVVAATPAAASGNGTSTPTAYEMLERYDFPRGILPVGVEGY
ELREDGSFEVYFPRDCEFMLARTWLVRYGARIAGAAASGRLTSLQGVYVKVLFVWLPVGE
VDRSGDTLSFYIGPVSTSFPLSDFAHSPHCRGYDHLPAAAAAAAAAL

Transcript Sequence

Transcript ID

Os12t0198000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:5070769:5071512:-1 gene:Os12g0198000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF538 family protein. (Os12t0198000-01)
Sequence

AAAACCCAATCAAAATCAACCCACGAGCTCTTCCTCCCACCTCCATGGCCGCCACCCACC
CCCTCCTCCTCCTCCTCCTCGCCGCCGCCGCCGTCGTCGTCCTCGTCGTAGCGGCGACAC
CGGCGGCGGCGAGCGGCAACGGGACGTCGACGCCGACGGCGTACGAGATGCTGGAGAGGT
ACGACTTCCCGCGGGGGATCCTGCCGGTGGGGGTGGAGGGGTACGAGCTCCGGGAGGACG
GGAGCTTCGAGGTGTACTTCCCGCGGGACTGCGAGTTCATGCTGGCGAGGACGTGGCTGG
TCCGGTACGGCGCCCGCATCGCCGGCGCCGCCGCCTCCGGCCGGCTCACGTCGCTCCAGG
GCGTCTACGTCAAGGTGCTCTTCGTCTGGCTCCCCGTCGGCGAGGTCGACCGCTCCGGCG
ACACTCTCAGCTTCTACATCGGCCCCGTCTCCACCTCCTTCCCCCTCTCCGACTTCGCCC
ACAGCCCGCACTGCCGCGGTTACGACCACCTCCCCGCCGCCGCCGCCGCCGCCGCTGCCG
CCTTGTGATTGGGTAGAGATGGGTAGTTCATTAATTAATCTGGGTGATTTGGCTGGGGTA
ATTACGTGTAATTAATCACAGGTGCTCCTGGTTGATTGGCTATTGATGCGAATGGAATTT
ACGCCACTATGGGATTTATTTTGAGTATATCATTTGGTGGCTTCTTTATGAACAAGTGTT
GGATGCAGATGCTGTTTGTTTGTC