Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0197500-02
CDS Infomation	cds chromosome:IRGSP-1.0:12:5035974:5040878:-1 gene:Os12g0197500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:suppressor of gene silencing 3 description:Homolog of Arabidopsis suppressor of gene silencing 3, Cofactor of RNA-dependent RNA polymerase, Defense response to virus (Os12t0197500-01);Similar to Protein SUPPRESSOR OF GENE SILENCING 3 homolog. (Os12t0197500-02);Similar to Protein SUPPRESSOR OF GENE SILENCING 3 homolog. (Os12t0197500-03)
Sequence	ATGGCGTCCGCCGGCGATCGCCGCGGCGGCGGGGGGCCTCCCGGCTCCGGCGACGACTCC GGGGGTGGTTGGGAGACTGTTGAGAAGAGGGTAAAGAAACCAGCGCAACAAGTTGGGAAG GGGCAATGGGGACAATGGAATTCTCCAAATGCTGCACCTGCACCTACTGCACCACGGAGT GGCTCTGGAGCTTTTCATCATTCTGGAAACACTTTGGTTCGACATTCTGATCGTAGGCCA GCAAGAGGCACTCCTAGGCCACCACCACAAAACAGGTCTATAGAGGCAGAACTGCAAGCA CCGCACGGAGTTGTGACTGCACCTCTGGCAAATGGTTGGCAGTGGGGAGCCAGGTCTTGC CCACCTGGTACTGAAAGCAAGGAGGGTGGTCTTCCTTTGTCTGGTTGTGATCCTGAAACA GACAATGCTGAAGGTTATGACACATCGGACGATGATAATGATGATGATATGAGTGACGAT TTGAGTGATGACTATGATTCTGATGCAAGTGAGAAAAGTTTTGAGACTCGGAAAAATCAC AAGTTGTTCAAAGGTTTCTTCGAAGTCCTGGAGGCGTTAAGTGTAGAACAGTTAAATGAA CCAACTAGGCAATGGCATTGCCCAGCATGCAAAAATGGACCTGGTGCAATTGACTGGTAC AAAGGGCTACAACCTTTGATGACTCATGCCAAAACAAAGGGTTCTATAAAGGTCAAGCGT CACAGAGAATTGGCTAGTTTATTGGAAGAAGAGCTATCTCGCAGGGGAACTTCAGTGGTA CCATCTGGCGAACAATTTAGGAAATGGAAAGGATTGCGGGAAAGCACTGATCGTGAGATT GTTTGGCCACCAATGGTGGTTGTTATGAACACTGTATTGGAACAAGATGAGGATGATAAG TGGAAAGGTATGGGGAACCAAGAGCTAATTGATTATTTCAGTGAATATGCTGCAAGCAAA GCACGCCATGCCTATGGTCCAAATGGGCACCGTGGCATGAGTGTGCTAATCTTTGACAGC TCGGCTGTGGGCTATATGGAAGCAGAACGTTTGCATGATCACTTTGTTCGTCAAAGAACA GACAGGAATACATGGAACAGTGCTCACAAGGTTACATTCTTACCTGGTGGGAAAAGGCAG CTGTATGGTTTCTTAGCTACAAAAGATGACATGGAGACATTCAATAGACATTGCCACGGA AAATCCCGTTTGAAATATGAGATGAGATCTTATAATGAGATGGTGGTTACCCAAATGAAG CAGATGAGCGAAGACAACCAGCAACTGAATTACCTGAAGAACAAAATGGTTAAGAAAGAG CAGCACTCTAAATTAGTAGAGGATACATTGAGTGTTGTTACCCAGAAACTTAGGGAGACA ATGGAAGAGAATACTATTGTACGAAATAAAGCCAAAGAAAAGCACTTGGAGTATGAGAAA GAGATGAAGTACCAGGAGGAATTTTTCCATGATCAAATCG

Peptide Sequence

PEP ID	Os12t0197500-02
PEP Infomation	pep chromosome:IRGSP-1.0:12:5035974:5040878:-1 gene:Os12g0197500 transcript:Os12t0197500-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:suppressor of gene silencing 3 description:Homolog of Arabidopsis suppressor of gene silencing 3, Cofactor of RNA-dependent RNA polymerase, Defense response to virus (Os12t0197500-01);Similar to Protein SUPPRESSOR OF GENE SILENCING 3 homolog. (Os12t0197500-02);Similar to Protein SUPPRESSOR OF GENE SILENCING 3 homolog. (Os12t0197500-03)
Sequence	MASAGDRRGGGGPPGSGDDSGGGWETVEKRVKKPAQQVGKGQWGQWNSPNAAPAPTAPRS GSGAFHHSGNTLVRHSDRRPARGTPRPPPQNRSIEAELQAPHGVVTAPLANGWQWGARSC PPGTESKEGGLPLSGCDPETDNAEGYDTSDDDNDDDMSDDLSDDYDSDASEKSFETRKNH KLFKGFFEVLEALSVEQLNEPTRQWHCPACKNGPGAIDWYKGLQPLMTHAKTKGSIKVKR HRELASLLEEELSRRGTSVVPSGEQFRKWKGLRESTDREIVWPPMVVVMNTVLEQDEDDK WKGMGNQELIDYFSEYAASKARHAYGPNGHRGMSVLIFDSSAVGYMEAERLHDHFVRQRT DRNTWNSAHKVTFLPGGKRQLYGFLATKDDMETFNRHCHGKSRLKYEMRSYNEMVVTQMK QMSEDNQQLNYLKNKMVKKEQHSKLVEDTLSVVTQKLRETMEENTIVRNKAKEKHLEYEK EMKYQEEFFHDQI

Transcript Sequence

Transcript ID	Os12t0197500-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:5035974:5040878:-1 gene:Os12g0197500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:suppressor of gene silencing 3 description:Homolog of Arabidopsis suppressor of gene silencing 3, Cofactor of RNA-dependent RNA polymerase, Defense response to virus (Os12t0197500-01);Similar to Protein SUPPRESSOR OF GENE SILENCING 3 homolog. (Os12t0197500-02);Similar to Protein SUPPRESSOR OF GENE SILENCING 3 homolog. (Os12t0197500-03)
Sequence	TCTCTCTCTCTCTCTCTCTCTCTCCTCGAAAACCCCAACACACACAACGCGAACCCCACT CCGCGATGGCGTCCGCCGGCGATCGCCGCGGCGGCGGGGGGCCTCCCGGCTCCGGCGACG ACTCCGGGGGTGGTTGGGAGACTGTTGAGAAGAGGGTAAAGAAACCAGCGCAACAAGTTG GGAAGGGGCAATGGGGACAATGGAATTCTCCAAATGCTGCACCTGCACCTACTGCACCAC GGAGTGGCTCTGGAGCTTTTCATCATTCTGGAAACACTTTGGTTCGACATTCTGATCGTA GGCCAGCAAGAGGCACTCCTAGGCCACCACCACAAAACAGGTCTATAGAGGCAGAACTGC AAGCACCGCACGGAGTTGTGACTGCACCTCTGGCAAATGGTTGGCAGTGGGGAGCCAGGT CTTGCCCACCTGGTACTGAAAGCAAGGAGGGTGGTCTTCCTTTGTCTGGTTGTGATCCTG AAACAGACAATGCTGAAGGTTATGACACATCGGACGATGATAATGATGATGATATGAGTG ACGATTTGAGTGATGACTATGATTCTGATGCAAGTGAGAAAAGTTTTGAGACTCGGAAAA ATCACAAGTTGTTCAAAGGTTTCTTCGAAGTCCTGGAGGCGTTAAGTGTAGAACAGTTAA ATGAACCAACTAGGCAATGGCATTGCCCAGCATGCAAAAATGGACCTGGTGCAATTGACT GGTACAAAGGGCTACAACCTTTGATGACTCATGCCAAAACAAAGGGTTCTATAAAGGTCA AGCGTCACAGAGAATTGGCTAGTTTATTGGAAGAAGAGCTATCTCGCAGGGGAACTTCAG TGGTACCATCTGGCGAACAATTTAGGAAATGGAAAGGATTGCGGGAAAGCACTGATCGTG AGATTGTTTGGCCACCAATGGTGGTTGTTATGAACACTGTATTGGAACAAGATGAGGATG ATAAGTGGAAAGGTATGGGGAACCAAGAGCTAATTGATTATTTCAGTGAATATGCTGCAA GCAAAGCACGCCATGCCTATGGTCCAAATGGGCACCGTGGCATGAGTGTGCTAATCTTTG ACAGCTCGGCTGTGGGCTATATGGAAGCAGAACGTTTGCATGATCACTTTGTTCGTCAAA GAACAGACAGGAATACATGGAACAGTGCTCACAAGGTTACATTCTTACCTGGTGGGAAAA GGCAGCTGTATGGTTTCTTAGCTACAAAAGATGACATGGAGACATTCAATAGACATTGCC ACGGAAAATCCCGTTTGAAATATGAGATGAGATCTTATAATGAGATGGTGGTTACCCAAA TGAAGCAGATGAGCGAAGACAACCAGCAACTGAATTACCTGAAGAACAAAATGGTTAAGA AAGAGCAGCACTCTAAATTAGTAGAGGATACATTGAGTGTTGTTACCCAGAAACTTAGGG AGACAATGGAAGAGAATACTATTGTACGAAATAAAGCCAAAGAAAAGCACTTGGAGTATG AGAAAGAGATGAAGTACCAGGAGGAATTTTTCCATGATCAAATCG