Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0192500-02
CDS Infomation	cds chromosome:IRGSP-1.0:12:4706854:4711156:1 gene:Os12g0192500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Phosphomethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase. (Os12t0192500-01);Phosphomethylpyrimidine kinase type-1 domain containing protein. (Os12t0192500-02);Similar to Phosphomethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase. (Os12t0192500-03)
Sequence	ATGGCGGCCGCACCACAGCAATCCGTGCACCCAAGCTTGCCCTCCTCAACCTCAACCCTC CGCCTCCTCATCTCCTCCTCCCCACGACGGCCTCCTCCGCCGCCGCCAAGAGCCCGCCGG TATAACAGGCTCGCGGCGTCGGCTTCGGCGGCGCGGGAGATGCCGTGGCCGCACGTGCTG ACGGTGGCCGGCTCCGACTCCGGCGGCGGCGCCGGCATCCAGGCCGACATCAAGGCCTGC GCCGCGCTGGGAGCCTACTGCTCCTCCGTCGTCACCGCCGTCACTGCCCAGAACACCGCC GGCGTCCAGGGGATTCATGTGGTGCCAGAGGAGTTCATCCGGGAGCAGCTCAACTCGGTT CTTTCGGACATGTCGGTGGATGTGGTCAAGACAGGAATGCTCCCTTCAATCGGAGTAGTC AGAGTTTTATGTGAAAGTCTAAAGAAGTTTCCAGTCAAAGCTTTAGTGGTGGATCCAGTT ATGGTGTCCACAAGTGGAGATACTCTTTCAGAATCATCTACTCTCTCTGTATATAGGGAT GAATTATTTGCTATGGCTGATATAGTCACCCCAAATGTGAAAGAAGCGTCGAGATTACTT GGGGGTGTATCTTTGCGCACTGTTTCTGACATGCGCAATGCAGCGGAGTCCATTTACAAA TTTGGTCCAAAACATGTACTTGTGAAAGGTGGGGATATGCTAGAATCCTCAGATGCAACT GATGTATTTTTTGATGGTAAGGAGTTCATTGAGCTCCATGCGCATCGCATAAAGACCCAT AACACACATGGAACTGGTTGCACTTTAGCTTCATGTATAGCTTCCGAATTAGCGAAAGGT GCAACGATGCTGCATGCTGTTCAGGTGGCTAAGAATTTTGTAGAATCTGCTCTTCATCAC AGTAAAGATCTTGTCGTTGGAAATGGACCTCAAGGCCCTTTTGATCACCTTTTCAAGCTC AAGTGTCCGCCATACAATGTTGGCTCACAGCCAAGCTTTAAGCCAGACCAACTCTTCCTG TATGCAGTGACAGACTCTGGGATGAACAAAAAGTGGGGTCGTTCAATCAAAGAAGCTGTG CAAGCTGCCATTGAAGGTGGCGCTACCATTGTACAACTGAGAGAAAAAGATTCCGAAACA AGAGAGTTTTTGGAAGCAGCCAAAGCATGCATGGAGATTTGCAAGTCCAGTGGAGTACCA CTGCTGATCAACGACCGGGTAGACATTGCCCTGGCATGCAATGCAGATGGTGTCCATGTT GGTCAATTGGACATGTCGGCACACGAAGTGCGGGAGCTCCTAGGGCCGGGTAAAATCATC GGCGTCTCGTGCAAGACCCCTGCTCAAGCCCAGCAGGCCTGGAATGATGGAGCAGACTAC ATTGGCTGTGGCGGTGTTTTCCCTACCTCCACGAAGGCGAACAATCCTACATTGGGGTTT GATGGCTTGAAGACAGTTTGCCTGGCATCTAAGCTGCCTGTGGTCGCTATTGGCGGCATC AACGCTTCAAATGCAGGTTCAGTGATGGAGCTTGGTCTCCCAAACCTCAAAGGCGTCGCA GTAGTCTCCGCTCTGTTTGACCGTCCGAGTGTCGTAGCCGAAACAAGAAACATGAAATCC ATCTTGACCAACACCTCTAGAACCTAG

Peptide Sequence

PEP ID	Os12t0192500-02
PEP Infomation	pep chromosome:IRGSP-1.0:12:4706854:4711156:1 gene:Os12g0192500 transcript:Os12t0192500-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Phosphomethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase. (Os12t0192500-01);Phosphomethylpyrimidine kinase type-1 domain containing protein. (Os12t0192500-02);Similar to Phosphomethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase. (Os12t0192500-03)
Sequence	MAAAPQQSVHPSLPSSTSTLRLLISSSPRRPPPPPPRARRYNRLAASASAAREMPWPHVL TVAGSDSGGGAGIQADIKACAALGAYCSSVVTAVTAQNTAGVQGIHVVPEEFIREQLNSV LSDMSVDVVKTGMLPSIGVVRVLCESLKKFPVKALVVDPVMVSTSGDTLSESSTLSVYRD ELFAMADIVTPNVKEASRLLGGVSLRTVSDMRNAAESIYKFGPKHVLVKGGDMLESSDAT DVFFDGKEFIELHAHRIKTHNTHGTGCTLASCIASELAKGATMLHAVQVAKNFVESALHH SKDLVVGNGPQGPFDHLFKLKCPPYNVGSQPSFKPDQLFLYAVTDSGMNKKWGRSIKEAV QAAIEGGATIVQLREKDSETREFLEAAKACMEICKSSGVPLLINDRVDIALACNADGVHV GQLDMSAHEVRELLGPGKIIGVSCKTPAQAQQAWNDGADYIGCGGVFPTSTKANNPTLGF DGLKTVCLASKLPVVAIGGINASNAGSVMELGLPNLKGVAVVSALFDRPSVVAETRNMKS ILTNTSRT

Transcript Sequence

Transcript ID	Os12t0192500-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:4706854:4711156:1 gene:Os12g0192500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Phosphomethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase. (Os12t0192500-01);Phosphomethylpyrimidine kinase type-1 domain containing protein. (Os12t0192500-02);Similar to Phosphomethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase. (Os12t0192500-03)
Sequence	ACCACCCGTGAAGCTCTGGAGTCGAGCGTGAACTTGGTCCACTACGCCATGGCGGCCGCA CCACAGCAATCCGTGCACCCAAGCTTGCCCTCCTCAACCTCAACCCTCCGCCTCCTCATC TCCTCCTCCCCACGACGGCCTCCTCCGCCGCCGCCAAGAGCCCGCCGGTATAACAGGCTC GCGGCGTCGGCTTCGGCGGCGCGGGAGATGCCGTGGCCGCACGTGCTGACGGTGGCCGGC TCCGACTCCGGCGGCGGCGCCGGCATCCAGGCCGACATCAAGGCCTGCGCCGCGCTGGGA GCCTACTGCTCCTCCGTCGTCACCGCCGTCACTGCCCAGAACACCGCCGGCGTCCAGGGG ATTCATGTGGTGCCAGAGGAGTTCATCCGGGAGCAGCTCAACTCGGTTCTTTCGGACATG TCGGTGGATGTGGTCAAGACAGGAATGCTCCCTTCAATCGGAGTAGTCAGAGTTTTATGT GAAAGTCTAAAGAAGTTTCCAGTCAAAGCTTTAGTGGTGGATCCAGTTATGGTGTCCACA AGTGGAGATACTCTTTCAGAATCATCTACTCTCTCTGTATATAGGGATGAATTATTTGCT ATGGCTGATATAGTCACCCCAAATGTGAAAGAAGCGTCGAGATTACTTGGGGGTGTATCT TTGCGCACTGTTTCTGACATGCGCAATGCAGCGGAGTCCATTTACAAATTTGGTCCAAAA CATGTACTTGTGAAAGGTGGGGATATGCTAGAATCCTCAGATGCAACTGATGTATTTTTT GATGGTAAGGAGTTCATTGAGCTCCATGCGCATCGCATAAAGACCCATAACACACATGGA ACTGGTTGCACTTTAGCTTCATGTATAGCTTCCGAATTAGCGAAAGGTGCAACGATGCTG CATGCTGTTCAGGTGGCTAAGAATTTTGTAGAATCTGCTCTTCATCACAGTAAAGATCTT GTCGTTGGAAATGGACCTCAAGGCCCTTTTGATCACCTTTTCAAGCTCAAGTGTCCGCCA TACAATGTTGGCTCACAGCCAAGCTTTAAGCCAGACCAACTCTTCCTGTATGCAGTGACA GACTCTGGGATGAACAAAAAGTGGGGTCGTTCAATCAAAGAAGCTGTGCAAGCTGCCATT GAAGGTGGCGCTACCATTGTACAACTGAGAGAAAAAGATTCCGAAACAAGAGAGTTTTTG GAAGCAGCCAAAGCATGCATGGAGATTTGCAAGTCCAGTGGAGTACCACTGCTGATCAAC GACCGGGTAGACATTGCCCTGGCATGCAATGCAGATGGTGTCCATGTTGGTCAATTGGAC ATGTCGGCACACGAAGTGCGGGAGCTCCTAGGGCCGGGTAAAATCATCGGCGTCTCGTGC AAGACCCCTGCTCAAGCCCAGCAGGCCTGGAATGATGGAGCAGACTACATTGGCTGTGGC GGTGTTTTCCCTACCTCCACGAAGGCGAACAATCCTACATTGGGGTTTGATGGCTTGAAG ACAGTTTGCCTGGCATCTAAGCTGCCTGTGGTCGCTATTGGCGGCATCAACGCTTCAAAT GCAGGTTCAGTGATGGAGCTTGGTCTCCCAAACCTCAAAGGCGTCGCAGTAGTCTCCGCT CTGTTTGACCGTCCGAGTGTCGTAGCCGAAACAAGAAACATGAAATCCATCTTGACCAAC ACCTCTAGAACCTAGAGCTACTACAATATTCTTTGTTCGAAGGGGATATGTTTATCAAAA TGAAGAGATGTTTCCAACTTTAATAATCAGAAGGCATTTCTTGTAATAATGCTTGATCAA AAGCATCTGTGATGCAGGGGAATGAGGAATCACAATCTTGCATCATTGGGATGTAAGGTA CAATGTTCAGATTTCTTTT