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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0188700-02
CDS Infomation

cds chromosome:IRGSP-1.0:12:4461716:4462738:-1 gene:Os12g0188700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:thioredoxin m, thioredoxin m-type description:Similar to Thioredoxin M5, chloroplastic. (Os12t0188700-01);Similar to Thioredoxin (TRX). (Os12t0188700-02)
Sequence

ATGGCGTTGGAGACGTGCTTCAGAGCCTGGGCGACTCTGCACGCCCCACAGCCACCGTCC
TCCGGCGGCAGTAGGGACAGACTCCTCCTCTCCGGCGCCGGCAGCAGCCAGTCCAAGCCA
AGGTTGTCCGTCGCCTCGCCGTCACCGCTCCGACCTGCCTCCCGCTTCGCCTGCCAGTGC
AGCAACGTCGTCGACGAAGTGGTGGTGGCGGACGAGAAGAACTGGGACAGCATGGTGCTG
GGGAGCGAGGCGCCGGTGCTGGTGGAGTTCTGGGCACCGTGGTGCGGACCGTGCAGGATG
ATCGCGCCGGTGATCGACGAGCTGGCCAAGGAGTACGTCGGCAAGATCAAGTGCTGCAAG
GTGAACACGGACGACTCACCAAACATCGCCACCAACTACGGCATCCGGAGCATCCCCACC
GTCCTCATGTTCAAGAACGGCGAGAAGAAGGAGAGCGTCATCGGCGCCGTCCCCAAGACC
ACCCTCGCCACCATCATCGACAAGTACGTCAGCAGCTGA

Peptide Sequence

PEP ID

Os12t0188700-02
PEP Infomation

pep chromosome:IRGSP-1.0:12:4461716:4462738:-1 gene:Os12g0188700 transcript:Os12t0188700-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:thioredoxin m, thioredoxin m-type description:Similar to Thioredoxin M5, chloroplastic. (Os12t0188700-01);Similar to Thioredoxin (TRX). (Os12t0188700-02)
Sequence

MALETCFRAWATLHAPQPPSSGGSRDRLLLSGAGSSQSKPRLSVASPSPLRPASRFACQC
SNVVDEVVVADEKNWDSMVLGSEAPVLVEFWAPWCGPCRMIAPVIDELAKEYVGKIKCCK
VNTDDSPNIATNYGIRSIPTVLMFKNGEKKESVIGAVPKTTLATIIDKYVSS

Transcript Sequence

Transcript ID

Os12t0188700-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:4461716:4462738:-1 gene:Os12g0188700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:thioredoxin m, thioredoxin m-type description:Similar to Thioredoxin M5, chloroplastic. (Os12t0188700-01);Similar to Thioredoxin (TRX). (Os12t0188700-02)
Sequence

ACAAAAAATTTTCTCCTCCTCTTTCTCTTCTCTCTGTGTCACTGCGTGTGAGGAGCGTAG
CTTAGAGTGAGAAAATAATGGCGTTGGAGACGTGCTTCAGAGCCTGGGCGACTCTGCACG
CCCCACAGCCACCGTCCTCCGGCGGCAGTAGGGACAGACTCCTCCTCTCCGGCGCCGGCA
GCAGCCAGTCCAAGCCAAGGTTGTCCGTCGCCTCGCCGTCACCGCTCCGACCTGCCTCCC
GCTTCGCCTGCCAGTGCAGCAACGTCGTCGACGAAGTGGTGGTGGCGGACGAGAAGAACT
GGGACAGCATGGTGCTGGGGAGCGAGGCGCCGGTGCTGGTGGAGTTCTGGGCACCGTGGT
GCGGACCGTGCAGGATGATCGCGCCGGTGATCGACGAGCTGGCCAAGGAGTACGTCGGCA
AGATCAAGTGCTGCAAGGTGAACACGGACGACTCACCAAACATCGCCACCAACTACGGCA
TCCGGAGCATCCCCACCGTCCTCATGTTCAAGAACGGCGAGAAGAAGGAGAGCGTCATCG
GCGCCGTCCCCAAGACCACCCTCGCCACCATCATCGACAAGTACGTCAGCAGCTGATTGC
ATCATCATCGTCGTCTTCTTCCTCTTCTTCTTCAGCTGCATCAATCAAATCAGACTTGAT
CGATCAGAGCTTCGTTTGTAAGTTGTAACTAAGCTACCCCCTGCTTTGCCTCTCTATGTG
TATCGCCAGCCACCCCTTTCTCTTCATCGTCCTTAATTGTTGTAATCCTACTACTCCATG
GAATCAATACTGTAACTATTATTGATTGATGATACCATCTTTTGACTAGCAAAGAGGAAT
CAAACTGTGCTACATATACATATATGATGGCCACATCTGTTTGAACTTTGATTGTATATG
CTTCAAGGCATCAAGCGGTAATCAGGGCAATTCAATTC