Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0183100-01
CDS Infomation	cds chromosome:IRGSP-1.0:12:4209290:4213068:1 gene:Os12g0183100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Branched chain alpha-keto acid dehydrogenase E1-alpha subunit (Fragment). (Os12t0183100-01);Similar to Branched-chain alpha keto-acid dehydrogenase E1 alpha subunit-like protein. (Os12t0183100-02);Similar to Branched-chain alpha keto-acid dehydrogenase E1 alpha subunit-like protein. (Os12t0183100-03)
Sequence	ATGGCGCCATGGCGTGCGGCGGCGATGGCGTCGTCCCAGCTCGCGCGCCGCGCGGCGAGG AGGCTGCTTTCGTCTCAGCATCGCCGTCACTGCGCCGCGCCCGCCTGTCCCTGGCTCCTG GGCTCGGCGCCGCCGGTTCTTGCGCCGTCTCCGGTGGCTGCGGCGGCGGCGGGAGATCGT CGGGGATTCTGCTCCGTCCGGCGTTTCACCGGGGAGAGCAACGCCGCCGCCGCCGTCGAG GAGGCGGAGAACGGGTTGGTGGCCGGTGGTGATCAGGCAATAGATTTCCCTGGAGGAAAG GTCTCCTTTGTTGCTGAAATGAACTTCCTTCCAGAATCTCAGAGGGATAGGATCAACTGT TACCGTGTTCTTGACGATGACGGCAGAACAATATCTGGAAGCAGATTCCAAGAGGTCAGT AAGGAGCTGGCTCTGAAAATGTACAATGAAATGGCCACCCTCCAGGTCATGGATACAATC TTCTTTGAAGCTCAGAGGCAGGGAAGAATCTCATTCTATCTCACTTCACATGGTGAGGAA GCAATCAATATAGCCTCTGCTGCTGCACTTACTATTGATGACATTGTACTGCCTCAGTAC AGGGAACCTGGTGTTCTTCTATGGCGCGGCTTCACACTGCAAGAATTTGCAAATCAGTGC TTTGGGAATAAGCTGGATTATGGTAAAGGGAGGCAGATGCCAATACACTATGGATCGAAC CGTCTGAATTATTTCACGGTGTCATCGCCTATTGCTACACAGCTCCCTCATGCTGTTGGA GCTGCGTACTCCTTGAAGATGGACAAGAAAGATGCATGTGCCATCACGTATTTTGGCGAT GGCGGCACAAGTGAGGGAGACTTCCATGCTGCACTCAACTTTGCAGCAGTTATGGAAGCG CCGGTGATCTTCTTCTGCCGCAACAATGGCTGGGCAATCAGCACCCCAACTAGTGAACAG TTCAGAAGTGATGGAGCTGTTATCCGTGGTCAAGCTTATGGAATGCGCAGTATCAGAGTA GATGGAAATGATGCTCTTGCTGTGTACAGTGCAGTTCACACAGCCAGGGAAATGGCTATC AAGGAAGGAAGGCCAATTTTAGTTGAGGCACTGACTTACCGGGTCGGCCATCACTCGACA TCCGATGATTCAACCAAATACAGGCCGGTCGATGAGATCGAGCACTGGCGAACAGCGCGA GATCCGATTTCCAGGTACAGAAAATGGGTTCAGGGGAATGGCTGGTGGTGTGATGAAGAT GAATCTGAACTCAGGAACAATGTGAGGCAAGAGCTTCTGAAAGCCATTCAGGTGGCAGAA AGAATGCCGAAACCGCCGCTCGCTGAACTATTCACCGATGTTTATGATGAAGTTCCTTCC AACCTAAGAGAGCAAGAGCGATTGCTGAGGGATACAATCAAGAAGCACCCTGCAGACTAC CCAGCTGATGTGCATATTTAG

Peptide Sequence

PEP ID	Os12t0183100-01
PEP Infomation	pep chromosome:IRGSP-1.0:12:4209290:4213068:1 gene:Os12g0183100 transcript:Os12t0183100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Branched chain alpha-keto acid dehydrogenase E1-alpha subunit (Fragment). (Os12t0183100-01);Similar to Branched-chain alpha keto-acid dehydrogenase E1 alpha subunit-like protein. (Os12t0183100-02);Similar to Branched-chain alpha keto-acid dehydrogenase E1 alpha subunit-like protein. (Os12t0183100-03)
Sequence	MAPWRAAAMASSQLARRAARRLLSSQHRRHCAAPACPWLLGSAPPVLAPSPVAAAAAGDR RGFCSVRRFTGESNAAAAVEEAENGLVAGGDQAIDFPGGKVSFVAEMNFLPESQRDRINC YRVLDDDGRTISGSRFQEVSKELALKMYNEMATLQVMDTIFFEAQRQGRISFYLTSHGEE AINIASAAALTIDDIVLPQYREPGVLLWRGFTLQEFANQCFGNKLDYGKGRQMPIHYGSN RLNYFTVSSPIATQLPHAVGAAYSLKMDKKDACAITYFGDGGTSEGDFHAALNFAAVMEA PVIFFCRNNGWAISTPTSEQFRSDGAVIRGQAYGMRSIRVDGNDALAVYSAVHTAREMAI KEGRPILVEALTYRVGHHSTSDDSTKYRPVDEIEHWRTARDPISRYRKWVQGNGWWCDED ESELRNNVRQELLKAIQVAERMPKPPLAELFTDVYDEVPSNLREQERLLRDTIKKHPADY PADVHI

Transcript Sequence

Transcript ID	Os12t0183100-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:4209290:4213068:1 gene:Os12g0183100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Branched chain alpha-keto acid dehydrogenase E1-alpha subunit (Fragment). (Os12t0183100-01);Similar to Branched-chain alpha keto-acid dehydrogenase E1 alpha subunit-like protein. (Os12t0183100-02);Similar to Branched-chain alpha keto-acid dehydrogenase E1 alpha subunit-like protein. (Os12t0183100-03)
Sequence	CACTTCTTGTTCTTGGCAGCGAGCGCCATTTCCAGAGGATTTCTTGGGTTCTATAGGTGA GGTTGGAGGCGCAGCTTCGTCGTCGTCTGATGGCGCCATGGCGTGCGGCGGCGATGGCGT CGTCCCAGCTCGCGCGCCGCGCGGCGAGGAGGCTGCTTTCGTCTCAGCATCGCCGTCACT GCGCCGCGCCCGCCTGTCCCTGGCTCCTGGGCTCGGCGCCGCCGGTTCTTGCGCCGTCTC CGGTGGCTGCGGCGGCGGCGGGAGATCGTCGGGGATTCTGCTCCGTCCGGCGTTTCACCG GGGAGAGCAACGCCGCCGCCGCCGTCGAGGAGGCGGAGAACGGGTTGGTGGCCGGTGGTG ATCAGGCAATAGATTTCCCTGGAGGAAAGGTCTCCTTTGTTGCTGAAATGAACTTCCTTC CAGAATCTCAGAGGGATAGGATCAACTGTTACCGTGTTCTTGACGATGACGGCAGAACAA TATCTGGAAGCAGATTCCAAGAGGTCAGTAAGGAGCTGGCTCTGAAAATGTACAATGAAA TGGCCACCCTCCAGGTCATGGATACAATCTTCTTTGAAGCTCAGAGGCAGGGAAGAATCT CATTCTATCTCACTTCACATGGTGAGGAAGCAATCAATATAGCCTCTGCTGCTGCACTTA CTATTGATGACATTGTACTGCCTCAGTACAGGGAACCTGGTGTTCTTCTATGGCGCGGCT TCACACTGCAAGAATTTGCAAATCAGTGCTTTGGGAATAAGCTGGATTATGGTAAAGGGA GGCAGATGCCAATACACTATGGATCGAACCGTCTGAATTATTTCACGGTGTCATCGCCTA TTGCTACACAGCTCCCTCATGCTGTTGGAGCTGCGTACTCCTTGAAGATGGACAAGAAAG ATGCATGTGCCATCACGTATTTTGGCGATGGCGGCACAAGTGAGGGAGACTTCCATGCTG CACTCAACTTTGCAGCAGTTATGGAAGCGCCGGTGATCTTCTTCTGCCGCAACAATGGCT GGGCAATCAGCACCCCAACTAGTGAACAGTTCAGAAGTGATGGAGCTGTTATCCGTGGTC AAGCTTATGGAATGCGCAGTATCAGAGTAGATGGAAATGATGCTCTTGCTGTGTACAGTG CAGTTCACACAGCCAGGGAAATGGCTATCAAGGAAGGAAGGCCAATTTTAGTTGAGGCAC TGACTTACCGGGTCGGCCATCACTCGACATCCGATGATTCAACCAAATACAGGCCGGTCG ATGAGATCGAGCACTGGCGAACAGCGCGAGATCCGATTTCCAGGTACAGAAAATGGGTTC AGGGGAATGGCTGGTGGTGTGATGAAGATGAATCTGAACTCAGGAACAATGTGAGGCAAG AGCTTCTGAAAGCCATTCAGGTGGCAGAAAGAATGCCGAAACCGCCGCTCGCTGAACTAT TCACCGATGTTTATGATGAAGTTCCTTCCAACCTAAGAGAGCAAGAGCGATTGCTGAGGG ATACAATCAAGAAGCACCCTGCAGACTACCCAGCTGATGTGCATATTTAGTTGTATTGGG TGACCAGAGGTTTCCATATTGTAGTAACTATTGATAATTTAGGTTCATAGCATTGATAAA TAATAACAACAATAATTCAGGCAATAAAATGCTGATCCAACAGTTATAAATCAAATACAA AAAAAATATTGTTGCT