Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0181900-01
CDS Infomation	cds chromosome:IRGSP-1.0:12:4163635:4167904:1 gene:Os12g0181900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os12t0181900-01)
Sequence	ATGGATCCTCCTCCTCCATGGCGCCGCCACTCGCCGGAGTTCGATTCCCTCCTCGTCGCC GGCCCGCGCCTCGGCCCGCTCAAGCAGGCCCACGCGCGCCTCGTCGTCGCCGGCCACGGC GGCTCGCTCCCGCTCGTCACCAAGCTCGCCACCCTCGCCGTGGCCGCCGGCGCCGCGCCC TACGCGCACCTCCTCGCGGCGTCCCACCCCGCCTGCGACTCCTTCCTCCTCTCCTCCCTC GCCCGCGCCGCCGCGCATCGCGGCCTCCCCGGCGAGGCCATCGCTTTCTACGGGCGCCTC CTCGCCGCCGCGCTCCCTTTCTCCAGCTTCGCCTTCACGGCCGCCGCCAAGGCCTGCGCC GACCTCTCCGCGCTCCGCACCGGCATGGCGGTGCACGCGCACTCCGTCCTTCTCGGGTTC GGCTCCGACCGGTTCGTGCAGACGGCGCTGGTCGTGCTCTACTCCAAGTGCGGCCAGCTA CCCGTTGCACGCAAGCTGTTCGACGCAATTCGTGACAGGAGCGTGGTCGCTTGGAACGCC ATGATTTCTGGGTATGAGCAGAATGGGCTTGCTGAGCGTGCGATTGAGGTGTATAGGGAG ATGCAGGTGGCTCAGGTGGTTCCTGATTCCGCAACGTTTGTCGCTACGCTCTCTGCTTGT GCGCAGGCTGGTGCTCTGGATTTGGGACGTGAAGTGGAAAGACGTATCGTCTCTGACCAG ATGGACGTGTCTGTGTTTCTTGGCAGTGCTCTTGTCAACATGTATGCCAGGTGCGGTCTT GTGAGCAAGGCTCGCGATTGGTTTGACAGGCTCCAAGAGAGGAATGTGGTCACATGGACT TCCATGATCGCAGGGTATGGAATGCATGGCCATGGTCGCGAGGCGATCAAGCTGTTCCAC TTGATGAGACGTGAGGGGCCAACACCCAATGATGTCACTTTTGTGGCTGTCTTAGCTGCG TGTGCGCATGCTGGGTTAGTTAATGAGGGTCGCAATGCTTTTGATTCCATGAAGAGGGTC TATGGACTTGTCCCTCGTGCCGAGCACTACTGTTCTATGGTTGATATGTATGGAAGAGCT GGACTTCTTGATGACGCAATGCAGTTTATATGTGATTCCATACCAGAAGAACCAGGACCT GAAGTTTGGACAGCGATGCTTGGAGCGTGCAAGATGCACAAGAATTTCAATCTTGGGGTG GAGGTGGCTGAGCGATTGATTGCTCTTGAGCCTGAGAATCCATCCCATCGAGTGCTGCTT TCGAATATATATGCTCTTTCTGGTAAAATGAATCACGTCGAGAAGGTGAGGAATGTCATG ATCAAGAGAAGATTGAAGAAGCAAATCGGATACAGCTTGATTGAGCTAGGAGGTACTTCA CATTTGTTCCGCATGGGCGAGAAGTCTCATCAGCAAACGAGAGAAATTTACCGGTACTTG GAGGAACTGATTCATAGGATTAGTGATGCTGGCTATGTACCTGAAACTGACTCAGTGCTG CATGAGTTGGAAGAAGAGGAGAGGGAGGTTGCACTGAGATATCACAGTGAAAAATTGGCA GTAGCATATGGCCTCATGATGAGCAGTGGGAGCACCGCTCCAATCAGGGTAATAAAAAAC CTGCGGATATGTGGCGATTGCCATCTCGCAATCAAATTCATGTCATCAGTGGAGAGCAGA GAGATAATTGTCAGGGACAAGCACCGCTTTCACCATTTTAAAGATGGCAAGTGTTCCTGT TTGGAATATTGGTAA

Peptide Sequence

PEP ID	Os12t0181900-01
PEP Infomation	pep chromosome:IRGSP-1.0:12:4163635:4167904:1 gene:Os12g0181900 transcript:Os12t0181900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os12t0181900-01)
Sequence	MDPPPPWRRHSPEFDSLLVAGPRLGPLKQAHARLVVAGHGGSLPLVTKLATLAVAAGAAP YAHLLAASHPACDSFLLSSLARAAAHRGLPGEAIAFYGRLLAAALPFSSFAFTAAAKACA DLSALRTGMAVHAHSVLLGFGSDRFVQTALVVLYSKCGQLPVARKLFDAIRDRSVVAWNA MISGYEQNGLAERAIEVYREMQVAQVVPDSATFVATLSACAQAGALDLGREVERRIVSDQ MDVSVFLGSALVNMYARCGLVSKARDWFDRLQERNVVTWTSMIAGYGMHGHGREAIKLFH LMRREGPTPNDVTFVAVLAACAHAGLVNEGRNAFDSMKRVYGLVPRAEHYCSMVDMYGRA GLLDDAMQFICDSIPEEPGPEVWTAMLGACKMHKNFNLGVEVAERLIALEPENPSHRVLL SNIYALSGKMNHVEKVRNVMIKRRLKKQIGYSLIELGGTSHLFRMGEKSHQQTREIYRYL EELIHRISDAGYVPETDSVLHELEEEEREVALRYHSEKLAVAYGLMMSSGSTAPIRVIKN LRICGDCHLAIKFMSSVESREIIVRDKHRFHHFKDGKCSCLEYW

Transcript Sequence

Transcript ID	Os12t0181900-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:4163635:4167904:1 gene:Os12g0181900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os12t0181900-01)
Sequence	ATTTTGATATATTCAATGTGTTTTGCCCTCAATGGATCCTCCTCCTCCATGGCGCCGCCA CTCGCCGGAGTTCGATTCCCTCCTCGTCGCCGGCCCGCGCCTCGGCCCGCTCAAGCAGGC CCACGCGCGCCTCGTCGTCGCCGGCCACGGCGGCTCGCTCCCGCTCGTCACCAAGCTCGC CACCCTCGCCGTGGCCGCCGGCGCCGCGCCCTACGCGCACCTCCTCGCGGCGTCCCACCC CGCCTGCGACTCCTTCCTCCTCTCCTCCCTCGCCCGCGCCGCCGCGCATCGCGGCCTCCC CGGCGAGGCCATCGCTTTCTACGGGCGCCTCCTCGCCGCCGCGCTCCCTTTCTCCAGCTT CGCCTTCACGGCCGCCGCCAAGGCCTGCGCCGACCTCTCCGCGCTCCGCACCGGCATGGC GGTGCACGCGCACTCCGTCCTTCTCGGGTTCGGCTCCGACCGGTTCGTGCAGACGGCGCT GGTCGTGCTCTACTCCAAGTGCGGCCAGCTACCCGTTGCACGCAAGCTGTTCGACGCAAT TCGTGACAGGAGCGTGGTCGCTTGGAACGCCATGATTTCTGGGTATGAGCAGAATGGGCT TGCTGAGCGTGCGATTGAGGTGTATAGGGAGATGCAGGTGGCTCAGGTGGTTCCTGATTC CGCAACGTTTGTCGCTACGCTCTCTGCTTGTGCGCAGGCTGGTGCTCTGGATTTGGGACG TGAAGTGGAAAGACGTATCGTCTCTGACCAGATGGACGTGTCTGTGTTTCTTGGCAGTGC TCTTGTCAACATGTATGCCAGGTGCGGTCTTGTGAGCAAGGCTCGCGATTGGTTTGACAG GCTCCAAGAGAGGAATGTGGTCACATGGACTTCCATGATCGCAGGGTATGGAATGCATGG CCATGGTCGCGAGGCGATCAAGCTGTTCCACTTGATGAGACGTGAGGGGCCAACACCCAA TGATGTCACTTTTGTGGCTGTCTTAGCTGCGTGTGCGCATGCTGGGTTAGTTAATGAGGG TCGCAATGCTTTTGATTCCATGAAGAGGGTCTATGGACTTGTCCCTCGTGCCGAGCACTA CTGTTCTATGGTTGATATGTATGGAAGAGCTGGACTTCTTGATGACGCAATGCAGTTTAT ATGTGATTCCATACCAGAAGAACCAGGACCTGAAGTTTGGACAGCGATGCTTGGAGCGTG CAAGATGCACAAGAATTTCAATCTTGGGGTGGAGGTGGCTGAGCGATTGATTGCTCTTGA GCCTGAGAATCCATCCCATCGAGTGCTGCTTTCGAATATATATGCTCTTTCTGGTAAAAT GAATCACGTCGAGAAGGTGAGGAATGTCATGATCAAGAGAAGATTGAAGAAGCAAATCGG ATACAGCTTGATTGAGCTAGGAGGTACTTCACATTTGTTCCGCATGGGCGAGAAGTCTCA TCAGCAAACGAGAGAAATTTACCGGTACTTGGAGGAACTGATTCATAGGATTAGTGATGC TGGCTATGTACCTGAAACTGACTCAGTGCTGCATGAGTTGGAAGAAGAGGAGAGGGAGGT TGCACTGAGATATCACAGTGAAAAATTGGCAGTAGCATATGGCCTCATGATGAGCAGTGG GAGCACCGCTCCAATCAGGGTAATAAAAAACCTGCGGATATGTGGCGATTGCCATCTCGC AATCAAATTCATGTCATCAGTGGAGAGCAGAGAGATAATTGTCAGGGACAAGCACCGCTT TCACCATTTTAAAGATGGCAAGTGTTCCTGTTTGGAATATTGGTAACTCTCCCTGGCTGT TCTTAGGTGCAATTCCCAGGTACTAAATTGACATAATAGTTTCTCAGGATTGAATCACTT CACGTAAAAAGTCTACTTTGCTTTTGCCAAACAAGTTGCCTATCATTGTGTACACTACCC AACCAGGACCTTTATCATCAGCGTCATCTTGTCAATATTTTATCACCCATGGCACAAGGT AACTTCTTCTGGGTTGTCTAATTCAATAAGTAGAGTAATTTTTCCTGATTGATGGGTTCT GTTGCTTCTCTGTTTGGTTATTTGTGGGCTCTGGCTTGTTGGTAAGTGTGTTGGATTTGG AGAACTCCTTTTCTCTTAATATGCTAACCCAAGTTTTCAGCTTAGTTACATTACATTTAT CTTTCCCCCAAAAAAAACAAGACACATGTTTGTATAAGATTAACCATTTATTTATTTTTA TTTTTTCACTGGCATTTCGATTGAATTCAGCATAGTTCGTAACGATGATCTTAATTGTTG TCAGTTCCCTATTTCTACGTTTTGCTCGCAAGTTTGTATCAAGCTCCATCATTGTTCTAA TCTATTATATTATTAAAGGAATAGAAAAAGGAGCCTCCACGTTCGCTCTCATGGTCTAGA AATTCTCACATTAATCGGAGAAAAAGAAAAAGTTAAGTTCATATAGAAATACAATTTAGA AATAGCTGAAATTCGGAATAAAAAAAAGGAATATTAGAAGAGGAGACTAGAGTCCATATA GAAATACAATTTAGAAATAGTTGAAATTCGGAATTAAAAAATAAGGAATATTAGGAGAGG AGACTAGAGTCCATATAGAAATACAATTAGGAAATAACTGAAATTCGGAATTGAAAACAA AGAATATTAGAAGTAGAGTATAGAGTCCATATAGAAATACAATTAGAAAATAATAGAAAT TCGGAATTAAAAATAAGGAATATTAGAAGTAGAGTATAGAGTCTATGTAGAAATACAATT AAGAAAAAAAATAGAAATTCGGAATTAAAAAATAAGGAATATTAGAAGTAGAGTATAGAG TCTATATAGAAATACAATTAAGAAAAAAAAATAGAAATTCGGAATTAAAAAATAAGGAAT ATTAGAAGTAGAGTATAGAGTCCATATAGGAATTTAAAACTAACTAAAATTCGGAATAAA CATAATAAAATTAAAAGTAGAGTTTAGAGTCCGTGTAAAAATACAATTTACAAATATCGA GATTAAGAAAAACATGGGAAGAAGAGTTAAAAGTAAATATAGGAATGCAATTTAGAAGTA ACTGAAATTCGAAATTAAAAATTAAAGAATATTGAAAGATGAGTTTAGAGTCCACGTAGA AATACAATTAAAAATAATAAAAATTCAGAAATAAAAATAAATAATATTGGAAGAGCATAG AGTCTATATAGAAATATAATTTACAGAAAATTCGGAACTAAAAAAAGAAATATTAAAAGA CGAATCTAGAGTCCATATAGGAATATATATAATTTACAAATTTAAAATTTGATAATAAAA ATAATTAATAACTAACACGTATATAAAATACAATATGAATATTACCCATTAGTAGTTTCG TAAAGTTATTGCAAAATTTAAAATTATGTTGTCATTTTAATATATTTGAATAATATATTG AGAAAACATATATGCTGTTATATGAGAGAAAATATAATAATGCTAGCCGTGCAAGCTGTG CGGGCCACCATGCTAGTTTTGCTTTATTTTATAAGAAGCCAGAATCCTGGAATCATGAAA ATGGCTTTTGGAAGGAAAAGATGCACTCCGACGAAAATGTGCTGCAACTGCCGTTACTCA AGTGTTTGAAGTTGCAGGTCAGATTCTAGGATATGTGTGGCTGTGGGCTTGGATACAGTG CTACACTGCAATAAAATTCTTGCCGATGAGGATGAGAGTTAACCGGATAATACAGAAGCA TGGTGATAATTACAAGGTTCAGACTACGTTGAACAGCATGCAAAAGCTCTGGAAGAGATA CATGTTGGTGACGAGAATATTGTAGCATCATACAGACATCTGGAATTCAATTTTACAATG TACTTTACTCCTAACCTCACACTAATGAGGAAGAAATCGCTGACAAGAAATATGTAAGCT AATTGTAAGTGTATAAAAATGGACTTGTTGGCTGTTGGAGAGGACTACAATCAGATGGAT TGCTAGCATTCACCTTCAATTTGGAACAAAATTAGGAAATACACACAAAAAAAGTCAAAG TTCTTCTGTATTTTTATCTAGGGATCTAATTGTGGATTCAGCAAATTTAATTGTTATTAC TCACATCTGATAACAGTGAAAAGCTTATGTGTGGTTTTAGGTTCCAATGCTCCATAATCA ATTCTTTTATTTGTTCATGC