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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0179800-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:4032214:4036962:-1 gene:Os12g0179800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Sir2, OsSIR2b, OsSir2b, OsSRT2, SRT2 description:NAD-dependent histone deacetylase, silent information regulator Sir2 domain containing protein. (Os12t0179800-01)
Sequence

ATGGCGGCGGGGGCGCACGCGTCGCGCGCTTCGGCTCCGATCATTGCAGGTCTCACAGGT
GCTCTTCGAGCAGCATATAAAGGATTTTCTCCTCAGTTATGCAACTTCCATGCGTCAGTA
AATAATGGACTTCTCCACAGAAGGAAAATACAACTCCATTTTATATGCTCTTTTCGCTCC
ATACAAGCAAGATATAACCATTCGTCAGCTGTTGCACCTAAGGACTATTGCGAAACTTAC
ATCCAGTTTCTAAGAGATAAACAGATAGTTCCTGATTCAGATCCTCCAAGTGCTAAGGAT
GTGGACCTACTTTACCGGTTTATTGATCAGAGTAAAAAACTCATGGTGTTAACTGGAGCA
GGAATGAGCACTGAATCAGGAATTCCTGATTATAGGAGCCCTAATGGTGCTTACAGTTCT
GGTTTTAAACCACTTACTCATCAGGAGTTTGTTCGTTCTATTCGAGCCCGAAGGCGGTAC
TGGGCTAGGAGCTATGCTGGATGGAGAAGGTTCAGGAGAGCACAACCAAACTCAGCCCAT
TATGCTCTTGCATCACTGGAGAGAATTGGCCGGGTACACTCAATGGTTACTCAAAACGTG
GATAGGTTGCATCATCGTGCTGGGAGTAAGCCAGTTGAATTGCATGGAAGTGTGTATGAG
GTAGCATGTTTAGACTGTGGTACATCCATTGACCGAGAATCATTCCAGGAGCAGGTCAAG
GACCTCAACCCAAAGTGGGCTCTAGCTATTGACAGTTTGGAAGTAGGACAACCGGGCTCA
GACAAAAGTTTCGGAATGCAGCAGCGACCTGATGGTGATATTGAGATTGATGAGAAGTTC
TGGGAGCAAGATTTTGATATTCCTAGTTGCAACCAATGTGGTGGAGTGCTGAAACCTGAT
GTTGTGATGTTTGGTGATAATGTTCCTGAAGAGAGAGCTGAAAGCACTAAGGAGGCTGCA
AGAAATTGTGATGCTCTTCTAGTGGTTGGTTCAGCACTAATGACAATGTCTGCTTTTAGG
CTCGCAAGGCTTGCACATGAAGCGAATGCTCCAATTGCGGCGATCACCATTGGTGAGACC
AGGGCTGATAGTATTTTATCCTTGAAAATTAATGCAAGATGTGGGGAGATACTGCCCAGA
ATACTTCAGATGGGAAGTCTAGCTGTACCAAACGTAAGTTAA

Peptide Sequence

PEP ID

Os12t0179800-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:4032214:4036962:-1 gene:Os12g0179800 transcript:Os12t0179800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Sir2, OsSIR2b, OsSir2b, OsSRT2, SRT2 description:NAD-dependent histone deacetylase, silent information regulator Sir2 domain containing protein. (Os12t0179800-01)
Sequence

MAAGAHASRASAPIIAGLTGALRAAYKGFSPQLCNFHASVNNGLLHRRKIQLHFICSFRS
IQARYNHSSAVAPKDYCETYIQFLRDKQIVPDSDPPSAKDVDLLYRFIDQSKKLMVLTGA
GMSTESGIPDYRSPNGAYSSGFKPLTHQEFVRSIRARRRYWARSYAGWRRFRRAQPNSAH
YALASLERIGRVHSMVTQNVDRLHHRAGSKPVELHGSVYEVACLDCGTSIDRESFQEQVK
DLNPKWALAIDSLEVGQPGSDKSFGMQQRPDGDIEIDEKFWEQDFDIPSCNQCGGVLKPD
VVMFGDNVPEERAESTKEAARNCDALLVVGSALMTMSAFRLARLAHEANAPIAAITIGET
RADSILSLKINARCGEILPRILQMGSLAVPNVS

Transcript Sequence

Transcript ID

Os12t0179800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:4032214:4036962:-1 gene:Os12g0179800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Sir2, OsSIR2b, OsSir2b, OsSRT2, SRT2 description:NAD-dependent histone deacetylase, silent information regulator Sir2 domain containing protein. (Os12t0179800-01)
Sequence

ATTTCCCACCAAACAAAAAAACCAAATCGCCGAGCAGCTTCGCGGCGACGCACCACGTCG
GCCGGCCGCCACCGCCGGAGAGGGAGGGCCTCCCCGACCCTCCCCGCCAAGAAGGATCCT
ATGGCGGCGGGGGCGCACGCGTCGCGCGCTTCGGCTCCGATCATTGCAGGTCTCACAGGT
GCTCTTCGAGCAGCATATAAAGGATTTTCTCCTCAGTTATGCAACTTCCATGCGTCAGTA
AATAATGGACTTCTCCACAGAAGGAAAATACAACTCCATTTTATATGCTCTTTTCGCTCC
ATACAAGCAAGATATAACCATTCGTCAGCTGTTGCACCTAAGGACTATTGCGAAACTTAC
ATCCAGTTTCTAAGAGATAAACAGATAGTTCCTGATTCAGATCCTCCAAGTGCTAAGGAT
GTGGACCTACTTTACCGGTTTATTGATCAGAGTAAAAAACTCATGGTGTTAACTGGAGCA
GGAATGAGCACTGAATCAGGAATTCCTGATTATAGGAGCCCTAATGGTGCTTACAGTTCT
GGTTTTAAACCACTTACTCATCAGGAGTTTGTTCGTTCTATTCGAGCCCGAAGGCGGTAC
TGGGCTAGGAGCTATGCTGGATGGAGAAGGTTCAGGAGAGCACAACCAAACTCAGCCCAT
TATGCTCTTGCATCACTGGAGAGAATTGGCCGGGTACACTCAATGGTTACTCAAAACGTG
GATAGGTTGCATCATCGTGCTGGGAGTAAGCCAGTTGAATTGCATGGAAGTGTGTATGAG
GTAGCATGTTTAGACTGTGGTACATCCATTGACCGAGAATCATTCCAGGAGCAGGTCAAG
GACCTCAACCCAAAGTGGGCTCTAGCTATTGACAGTTTGGAAGTAGGACAACCGGGCTCA
GACAAAAGTTTCGGAATGCAGCAGCGACCTGATGGTGATATTGAGATTGATGAGAAGTTC
TGGGAGCAAGATTTTGATATTCCTAGTTGCAACCAATGTGGTGGAGTGCTGAAACCTGAT
GTTGTGATGTTTGGTGATAATGTTCCTGAAGAGAGAGCTGAAAGCACTAAGGAGGCTGCA
AGAAATTGTGATGCTCTTCTAGTGGTTGGTTCAGCACTAATGACAATGTCTGCTTTTAGG
CTCGCAAGGCTTGCACATGAAGCGAATGCTCCAATTGCGGCGATCACCATTGGTGAGACC
AGGGCTGATAGTATTTTATCCTTGAAAATTAATGCAAGATGTGGGGAGATACTGCCCAGA
ATACTTCAGATGGGAAGTCTAGCTGTACCAAACGTAAGTTAAGCTGGTGCTGCGCAGTCA
TCTTTGTCGGAAACCATGTTTCCATGTAAGAACAATTCTTTGGAGAACAAACAAGTCACA
AGGGAAGACGAAACAATGAAAGAAACTTTTAGCAACTAATTAAGTTCAGTTCAACTGGGC
AGAATATCATCTCCATCCTGTTTGCATGAGATGAGGGAGTTAACCTTGTTAACCCTGTTG
TTGTAAGTGTGTAAACCTTAACCTTGTTAACCCTGTTGTTGTAAGTGTGTAAACCTTTTT
CAGTGACAATTCATTCAAATGTTTCCAAAGATATGGATATCCCGAACTGATCAGCACATT
GAAGAAGTACAATATGCTTTGATAGTTCCTTGTAATGTGTCATTAAGCAGAAGTTGAAAA
ACGTTCTAGCTGGTCCGGATATTTGGATTCATGTAGTCTATTGTGCTCTTCACCTGT