Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0178000-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:3952789:3955835:1 gene:Os12g0178000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Aldehyde dehydrogenase family protein, expressed. (Os12t0178000-01)
Sequence

TTTTGCTTATCCATTTCAGTGCTGTCGATCGACCCGATCATCGGAGCGATCGCCGCCGGC
AACGCCGTGGTGCTGAAGCCGTCGGAGGTGGCGCCGGCGACCTCGTCGCTGCTGGCCGAG
CTGCTGCCGCGCTACGTCGACGGCAGCTGCATCAAGGTCGTCGAGGGTGGCGTCGCCGAA
ACCACCACCCTGCTCGAGCAGAAATGGGACAAGATCTTCTACACAGGGAATGGCAAGGTA
GGACGCATCGTGATGGCGTCGGCGGCGAAGCACCTGACGCCGGTGGTCCTGGAGCTCGGC
GGAAAATGCCCGGTTGTTGTCGACTCTAATGTCAACCTCCATGTTACTGCCAAGAGGATA
GCCGCCGGGAAATGGGGTTGCAACAATGGGCAGGCCTGCATTTCTCCTGATTTCATCATA
ACAACAAAATCATTCGCCCCAAAGCTGCTGGAGGCTCTAGAGAAAGTTTTGGAGAAGTTC
TACGGGAGGGACCCGCTGCGATCATCTGACTTGTCGCGAATTGTGAATTCCAACCATTTT
AACCGGCTGAAGAAGCTGATGGACGATGAAAATGTCTCTGATAAGATCGTGTTCGGAGGT
CAGAGAGATGAACATCAGCTAAAGATAGCCCCTACAATCTTCATGGATGTTCCTCTTGAT
TCAGGGATCATGAAGGAGGAAATCTTTGGCCCCTTGCTTCCTATCATAACGGTTGATAAG
ATCCATGAGAGCTTTGCTCTCATCAACTCCATGACAAAGGCACTTGCAGCCTACCTCTTC
ACCAAGGACAGCAAGCTCCAGGAACAATATGAGGCAGCCATCTCTGCAGGAGGAATGCTT
GTCAACGACACAGCCGTCCACCTAACAAACCAGTACCTACCTTTTGGAGGAGTTGGGGAG
AGCGGCATGGGAGCCTACCATGGCAGGTTCAGCTTCGAGGCCTTCAGCCACAAGAAGGCC
GTGCTGGTCCGCCGCTTCGCCGGCGAGGCGGCGGCGAGGTACCCGCCGTACTCGCCGGCG
AAGCTCAAGATCCTCAGGGGAGTGCTCAAGGGCAACCTGGGAGCCATGATCAAGGCTATC
TTGGGGTTTCCAAGAGGGAAATGA

Peptide Sequence

PEP ID

Os12t0178000-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:3952789:3955835:1 gene:Os12g0178000 transcript:Os12t0178000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Aldehyde dehydrogenase family protein, expressed. (Os12t0178000-01)
Sequence

FCLSISVLSIDPIIGAIAAGNAVVLKPSEVAPATSSLLAELLPRYVDGSCIKVVEGGVAE
TTTLLEQKWDKIFYTGNGKVGRIVMASAAKHLTPVVLELGGKCPVVVDSNVNLHVTAKRI
AAGKWGCNNGQACISPDFIITTKSFAPKLLEALEKVLEKFYGRDPLRSSDLSRIVNSNHF
NRLKKLMDDENVSDKIVFGGQRDEHQLKIAPTIFMDVPLDSGIMKEEIFGPLLPIITVDK
IHESFALINSMTKALAAYLFTKDSKLQEQYEAAISAGGMLVNDTAVHLTNQYLPFGGVGE
SGMGAYHGRFSFEAFSHKKAVLVRRFAGEAAARYPPYSPAKLKILRGVLKGNLGAMIKAI
LGFPRGK

Transcript Sequence

Transcript ID

Os12t0178000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:3952789:3955835:1 gene:Os12g0178000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Aldehyde dehydrogenase family protein, expressed. (Os12t0178000-01)
Sequence

CTTTTGCTTATCCATTTCAGTGCTGTCGATCGACCCGATCATCGGAGCGATCGCCGCCGG
CAACGCCGTGGTGCTGAAGCCGTCGGAGGTGGCGCCGGCGACCTCGTCGCTGCTGGCCGA
GCTGCTGCCGCGCTACGTCGACGGCAGCTGCATCAAGGTCGTCGAGGGTGGCGTCGCCGA
AACCACCACCCTGCTCGAGCAGAAATGGGACAAGATCTTCTACACAGGGAATGGCAAGGT
AGGACGCATCGTGATGGCGTCGGCGGCGAAGCACCTGACGCCGGTGGTCCTGGAGCTCGG
CGGAAAATGCCCGGTTGTTGTCGACTCTAATGTCAACCTCCATGTTACTGCCAAGAGGAT
AGCCGCCGGGAAATGGGGTTGCAACAATGGGCAGGCCTGCATTTCTCCTGATTTCATCAT
AACAACAAAATCATTCGCCCCAAAGCTGCTGGAGGCTCTAGAGAAAGTTTTGGAGAAGTT
CTACGGGAGGGACCCGCTGCGATCATCTGACTTGTCGCGAATTGTGAATTCCAACCATTT
TAACCGGCTGAAGAAGCTGATGGACGATGAAAATGTCTCTGATAAGATCGTGTTCGGAGG
TCAGAGAGATGAACATCAGCTAAAGATAGCCCCTACAATCTTCATGGATGTTCCTCTTGA
TTCAGGGATCATGAAGGAGGAAATCTTTGGCCCCTTGCTTCCTATCATAACGGTTGATAA
GATCCATGAGAGCTTTGCTCTCATCAACTCCATGACAAAGGCACTTGCAGCCTACCTCTT
CACCAAGGACAGCAAGCTCCAGGAACAATATGAGGCAGCCATCTCTGCAGGAGGAATGCT
TGTCAACGACACAGCCGTCCACCTAACAAACCAGTACCTACCTTTTGGAGGAGTTGGGGA
GAGCGGCATGGGAGCCTACCATGGCAGGTTCAGCTTCGAGGCCTTCAGCCACAAGAAGGC
CGTGCTGGTCCGCCGCTTCGCCGGCGAGGCGGCGGCGAGGTACCCGCCGTACTCGCCGGC
GAAGCTCAAGATCCTCAGGGGAGTGCTCAAGGGCAACCTGGGAGCCATGATCAAGGCTAT
CTTGGGGTTTCCAAGAGGGAAATGAAATCTTATGTCCTCAGCAATGTATATTTCACCATG
ATAAAAGATGTATGCTGTATGTTTTCTCGATGAAGAGAACATTTCAGTGCAGTTGTGGGT
ATAAAATAAATATGTATAGTAGGATTGGCAGATG