Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0176800-01
CDS Infomation	cds chromosome:IRGSP-1.0:12:3885396:3889693:-1 gene:Os12g0176800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Heterochromatin protein (Fragment). (Os12t0176800-01)
Sequence	ATGTCTGGCCGAGGACTGATGAAGCAGGACTTAAGCAAGCTTGACGTGACGAAGCTCCAC CCTTTATCACCTGAAGTTATCTCACGCCAGGCGACGATCAATATCGGTACCATAGGGCAT GTGGCCCATGGAAAGTCCACTGTTGTGAAGGCTATATCTGGAGTTCAGACCGTTCGCTTC AAGAATGAGCTGGAGCGTAACATCACTATAAAGCTTGGCTATGCTAATGCGAAAATCTAC AAATGTGAAGACGAGAAATGTCCACGACCAATGTGCTACAAGGCTTATGGAAGCGGAAAA GAAGATAGCCCTCACTGTGATGTGCCTGGGTTTGAAAACACTAGGATGAAGCTACTGAGA CATGTTTCTTTTGTTGATTGTCCGGGACACGATATTCTCATGGCTACGATGCTTAATGGA GCTGCTATCATGGATGGAGCATTGCTTCTGATAGCAGCAAATGAAAGTTGCCCACAACCC CAGACATCTGAGCACCTTGCTGCAGTTGAAATCATGCGTCTCCAGCATATCATCATTCTT CAGAACAAGATTGATCTTATCCAGGAAGGTGCGGCGATGAATCAGCATGAAGCAATCCAG AAATTCATCCAGGGCACCATTGCTGAAGGTGCTCCAGTGGTGCCAATATCTGCTCAACTG AAGTACAACATTGATGTGATCTGTGAATACATTGTGAAGAAAATCCCCATTCCTGAAAGG AACTTCACTTCCCCTCCAAACATGATTGTTATTCGCTCCTTTGATGTCAACAAGCCTGGT TCAGAGGTTGATGAAATTAGGGGTGGTGTAGCTGGTGGCAGCATTCTCAGAGGAGTTTTG AGGGTTAACCAGAACATTGAAGTTCGCCCGGGAATTGTAATGAAGGATGAGAGCGGCAAC ATCAAATGCACCCCAATCTATTCGAGGATCGTTTCACTCTATGCTGAACAGAATGAACTC CAATTTGCTGTGCCAGGAGGTCTTATTGGTGTTGGAACAACCATGGATCCAACTTTGACA CGTGCCGATAGACTGGTTGGGCAGGTTCTGGGTGAAGTTGGATCCCTTCCTGATGTCTAT GTGGAGCTTGAGATCAACTTCTTCCTTCTTCGGAGGCTATTAGGTGTGAGGACAAAAGGC ACAGAGAAGGCTGGGAAGGTCTCCAAGCTCACCAAGGGTGAAATCCTCATGCTTAACATC GGATCTATGTCGACTGGTGCTCGCGTGGTTGCTGTCAAGAACGATCTCGCCAAGCTTCAG CTCACTGCCCCTGTCTGCACAAGCAAAGGTGAGAAGGTTGCCCTCAGCCGCCGTGTCGAG AAGCATTGGCGCCTCATCGGATGGGGCCAGATCCAGGCTGGCACGACGCTCGAAGTTCCA CCATGCCCGCTCTGA

Peptide Sequence

PEP ID	Os12t0176800-01
PEP Infomation	pep chromosome:IRGSP-1.0:12:3885396:3889693:-1 gene:Os12g0176800 transcript:Os12t0176800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Heterochromatin protein (Fragment). (Os12t0176800-01)
Sequence	MSGRGLMKQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRF KNELERNITIKLGYANAKIYKCEDEKCPRPMCYKAYGSGKEDSPHCDVPGFENTRMKLLR HVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIIL QNKIDLIQEGAAMNQHEAIQKFIQGTIAEGAPVVPISAQLKYNIDVICEYIVKKIPIPER NFTSPPNMIVIRSFDVNKPGSEVDEIRGGVAGGSILRGVLRVNQNIEVRPGIVMKDESGN IKCTPIYSRIVSLYAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPDVY VELEINFFLLRRLLGVRTKGTEKAGKVSKLTKGEILMLNIGSMSTGARVVAVKNDLAKLQ LTAPVCTSKGEKVALSRRVEKHWRLIGWGQIQAGTTLEVPPCPL

Transcript Sequence

Transcript ID	Os12t0176800-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:3885396:3889693:-1 gene:Os12g0176800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Heterochromatin protein (Fragment). (Os12t0176800-01)
Sequence	ATCCTCGCAACCACTGTCTCGCTCTCCGCCGCCATCGCCGCCGCCGCCTTCCTCTCCGCC GCCGCCGTTGGTACTCGCGCTTGCCGCCCGTCGAGCTCCCCTCACCGATAAAGGCTCACC GAAGGTTTCGTCGTCGACCCCGGGAGTTTCAAATATGTCTGGCCGAGGACTGATGAAGCA GGACTTAAGCAAGCTTGACGTGACGAAGCTCCACCCTTTATCACCTGAAGTTATCTCACG CCAGGCGACGATCAATATCGGTACCATAGGGCATGTGGCCCATGGAAAGTCCACTGTTGT GAAGGCTATATCTGGAGTTCAGACCGTTCGCTTCAAGAATGAGCTGGAGCGTAACATCAC TATAAAGCTTGGCTATGCTAATGCGAAAATCTACAAATGTGAAGACGAGAAATGTCCACG ACCAATGTGCTACAAGGCTTATGGAAGCGGAAAAGAAGATAGCCCTCACTGTGATGTGCC TGGGTTTGAAAACACTAGGATGAAGCTACTGAGACATGTTTCTTTTGTTGATTGTCCGGG ACACGATATTCTCATGGCTACGATGCTTAATGGAGCTGCTATCATGGATGGAGCATTGCT TCTGATAGCAGCAAATGAAAGTTGCCCACAACCCCAGACATCTGAGCACCTTGCTGCAGT TGAAATCATGCGTCTCCAGCATATCATCATTCTTCAGAACAAGATTGATCTTATCCAGGA AGGTGCGGCGATGAATCAGCATGAAGCAATCCAGAAATTCATCCAGGGCACCATTGCTGA AGGTGCTCCAGTGGTGCCAATATCTGCTCAACTGAAGTACAACATTGATGTGATCTGTGA ATACATTGTGAAGAAAATCCCCATTCCTGAAAGGAACTTCACTTCCCCTCCAAACATGAT TGTTATTCGCTCCTTTGATGTCAACAAGCCTGGTTCAGAGGTTGATGAAATTAGGGGTGG TGTAGCTGGTGGCAGCATTCTCAGAGGAGTTTTGAGGGTTAACCAGAACATTGAAGTTCG CCCGGGAATTGTAATGAAGGATGAGAGCGGCAACATCAAATGCACCCCAATCTATTCGAG GATCGTTTCACTCTATGCTGAACAGAATGAACTCCAATTTGCTGTGCCAGGAGGTCTTAT TGGTGTTGGAACAACCATGGATCCAACTTTGACACGTGCCGATAGACTGGTTGGGCAGGT TCTGGGTGAAGTTGGATCCCTTCCTGATGTCTATGTGGAGCTTGAGATCAACTTCTTCCT TCTTCGGAGGCTATTAGGTGTGAGGACAAAAGGCACAGAGAAGGCTGGGAAGGTCTCCAA GCTCACCAAGGGTGAAATCCTCATGCTTAACATCGGATCTATGTCGACTGGTGCTCGCGT GGTTGCTGTCAAGAACGATCTCGCCAAGCTTCAGCTCACTGCCCCTGTCTGCACAAGCAA AGGTGAGAAGGTTGCCCTCAGCCGCCGTGTCGAGAAGCATTGGCGCCTCATCGGATGGGG CCAGATCCAGGCTGGCACGACGCTCGAAGTTCCACCATGCCCGCTCTGAATTGTGTTTCT CCAGGCAGAAATCCTAATCTTTGAGAGAAGATAGAAGAGATGTGGAAGGGCAGAGAGCTC CTAGGCACTATTTTTGTGAGGTGGATGAGAAAACATGAATTTGATTTGGAAGCCATGTCA TTGCGTGCTATCGAATTCAGCTATGCTACAAAAGTTTTGCTTACATCTGCATTCTGAATT ATGGAGAATCGTTTTTTCACCATGTTATAATGAATTTGAAGTGGGGAGAAACCTACTAAT TGATCAGAATTGCATTATTGCATTTCTCACTGAATCCAATCAGTGATGTATTATTGCATT GAACATGTTGCAAGAAAGGAACATATCGCTCTGGATTTT