Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0173400-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:3723692:3726842:-1 gene:Os12g0173400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os12t0173400-01)
Sequence

ATGGAGGTGGATTCGGGTCGGAACGGGACCGGCCACGGCCAGATCGCTGGCCCCGACGAG
GAGATCCCCGCCGGCGGAGACGCGAAGAGGTCGCGCGAGGAGGGCGGCCGCAACACCACC
ACCACCTGCCAAGAAGACGAGGACGAGGACAACGACTACTACAACGACGACTCCAATTTC
CTCGACTCCTACCGTACCACCTGGGCCACCAACTACGGCAAAAACGACGGATCCTCCTTT
GAGGACGAGACTGCAATCCGGCCCATGCAGCACACTGATGGACCTGTGCTGCCGATATCC
TCGTGGCCAATGGACGTGCTACAAATATTTTCAGTCAAGGTGACAGAGGTCATGGGGAAC
CTTGAGTGGCCACTGCGTGTCTACGGCATCGTTGCTGTCCGTGACTCGCTGGATCACAAG
AGGAACGTCCTCTTCCGCCGCGACAGGGACGACTGCCAGACCCTCACCTCGCCACAGGAT
TCATCTCTGACGCTCACTGGCCCTAGCCGTGCCGTCGTGCTGATCAACCCTGTCATGTTC
GAGGTTGACCTCAAGGTGATCACCCACAACAATAGTGGCTTGCCGTTGTCTGAATCTGAA
GAGGACGATAAGGTGCTAAGCTACAACGCCTTCTTCTACGACGGCGTAGCTCACATGAAC
AACACTGGCTTCGCCCGGAGATCCGTCGAGTCGACGGAGCACTCCACAATGGAGTTCGTC
TTCGCACACCTGATATTCGCCGTGGAGGCCACCATCGCAGTTCGTGTCATCGAAGGCTCA
ACCGATTTCAGGGCCCGTCTCACCGCTCGCACCGCTGGCATCGATGAAGACGTGGTGCTG
CTCGACTCCGGTGACGGCAAGGTGGCGGTGGTCAATGACGATGACGACAGTGGCCCACTC
GTCGTGCTGCAGCGGCGCGTCGTGGTGGTGGAGGAGAAGGGAAGCCTGATCCTTGGTGTG
GAGGCTGCAGAGATTGGCAGCGAAGAGATTGTGACGAGACAGGTGGACATCAGGCCTAGG
CATGCGTTGAGAAGCAGGTGTGGATTCAATCTTGGGTTCTGCAGGATGTCGGTCATGATC
GCCTGGTCAGTGCTACCTTAA

Peptide Sequence

PEP ID

Os12t0173400-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:3723692:3726842:-1 gene:Os12g0173400 transcript:Os12t0173400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os12t0173400-01)
Sequence

MEVDSGRNGTGHGQIAGPDEEIPAGGDAKRSREEGGRNTTTTCQEDEDEDNDYYNDDSNF
LDSYRTTWATNYGKNDGSSFEDETAIRPMQHTDGPVLPISSWPMDVLQIFSVKVTEVMGN
LEWPLRVYGIVAVRDSLDHKRNVLFRRDRDDCQTLTSPQDSSLTLTGPSRAVVLINPVMF
EVDLKVITHNNSGLPLSESEEDDKVLSYNAFFYDGVAHMNNTGFARRSVESTEHSTMEFV
FAHLIFAVEATIAVRVIEGSTDFRARLTARTAGIDEDVVLLDSGDGKVAVVNDDDDSGPL
VVLQRRVVVVEEKGSLILGVEAAEIGSEEIVTRQVDIRPRHALRSRCGFNLGFCRMSVMI
AWSVLP

Transcript Sequence

Transcript ID

Os12t0173400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:3723692:3726842:-1 gene:Os12g0173400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os12t0173400-01)
Sequence

AAAAGCCCTAGCTTTCTTATCCGGGGAAAGAAAAAGAAAAAAGAAAAAACCCTAGCGATC
GATCTTGGCGGCGAGGCGAGCGACAGGGGATGGAGGTGGATTCGGGTCGGAACGGGACCG
GCCACGGCCAGATCGCTGGCCCCGACGAGGAGATCCCCGCCGGCGGAGACGCGAAGAGGT
CGCGCGAGGAGGGCGGCCGCAACACCACCACCACCTGCCAAGAAGACGAGGACGAGGACA
ACGACTACTACAACGACGACTCCAATTTCCTCGACTCCTACCGTACCACCTGGGCCACCA
ACTACGGCAAAAACGACGGATCCTCCTTTGAGGACGAGACTGCAATCCGGCCCATGCAGC
ACACTGATGGACCTGTGCTGCCGATATCCTCGTGGCCAATGGACGTGCTACAAATATTTT
CAGTCAAGGTGACAGAGGTCATGGGGAACCTTGAGTGGCCACTGCGTGTCTACGGCATCG
TTGCTGTCCGTGACTCGCTGGATCACAAGAGGAACGTCCTCTTCCGCCGCGACAGGGACG
ACTGCCAGACCCTCACCTCGCCACAGGATTCATCTCTGACGCTCACTGGCCCTAGCCGTG
CCGTCGTGCTGATCAACCCTGTCATGTTCGAGGTTGACCTCAAGGTGATCACCCACAACA
ATAGTGGCTTGCCGTTGTCTGAATCTGAAGAGGACGATAAGGTGCTAAGCTACAACGCCT
TCTTCTACGACGGCGTAGCTCACATGAACAACACTGGCTTCGCCCGGAGATCCGTCGAGT
CGACGGAGCACTCCACAATGGAGTTCGTCTTCGCACACCTGATATTCGCCGTGGAGGCCA
CCATCGCAGTTCGTGTCATCGAAGGCTCAACCGATTTCAGGGCCCGTCTCACCGCTCGCA
CCGCTGGCATCGATGAAGACGTGGTGCTGCTCGACTCCGGTGACGGCAAGGTGGCGGTGG
TCAATGACGATGACGACAGTGGCCCACTCGTCGTGCTGCAGCGGCGCGTCGTGGTGGTGG
AGGAGAAGGGAAGCCTGATCCTTGGTGTGGAGGCTGCAGAGATTGGCAGCGAAGAGATTG
TGACGAGACAGGTGGACATCAGGCCTAGGCATGCGTTGAGAAGCAGGTGTGGATTCAATC
TTGGGTTCTGCAGGATGTCGGTCATGATCGCCTGGTCAGTGCTACCTTAATTCATGTCTC
ATGTGCATTCAATGCTTGACTAATCCATGGCTAACTACTACCTTTATGAGGATGACACTT
AGTACTAATTTTAAGCCTCTGTCAAATTGCAAGTACTGCTTTGAACTAATTAAGCTAGAT
GTGATGTGATGTGATGGTGCCGATGGTTTCTTTTGTACTTGTGAAGTTGTGACCAGCCGG
TTG