Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0172500-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:3673051:3679299:-1 gene:Os12g0172500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsWD40-195 description:WD40 repeat-like domain containing protein. (Os12t0172500-01)
Sequence

ATGGCGGCAGCGGCGAATTCCTCGGCCTCCGCGGCGGGGGCCGGCGGCGGCTCCGCGGCG
GCGGCCGGGCTCAAGACCTACTTCAAGACCCCCGAGGGGAGGTACAAGCTGCAGTACGAG
AAGACGCACTCCGCCGCCGTGCTTCACTACAACCACGGCGGGAAGACCGTCTCGCAGTTG
ACGGTAGCGTATCTCAAGGAGAAGCCTGCCGGACAGGGCTCCACGCCTTCCACGCCAAGC
TCCAGCAGCGGGATGCGTTCTGCAGCAGCGAGGCTTCTTGGCTCTGGGAATGGTAACCGG
ACGCTTAGCTTTGTTGGGGGAAATGGTGTAAGCCGGGCTGTGTCTGGGAGCAGCCGCATT
GGGGGTGGCCTTGGTACATCCGGAGGCATTGGTAGTTCACAAGCTGTGGCAAATTACGAT
GGCAAGGGTACATACATCATTTTCAACACCGCTGATACACTATTCATCAGTGACCTCAAT
TCTCAAGACAAGGATCCAATAAAGTCCATCCATTTCAGCAACTCGAACCCACTATGCCAT
GCATTCGACCCAGAGGCCAAGGAGGGACATGACCTGATCATTGGTATGGGGTCAGGGGAT
GTCTATTCAATGTCACTGAGGCAACAATTGCAAGATTCTGGAAGGAAGCCTGTTGCGGCC
CAACATTACAACAAGGGTGATAAAGATGGAACAAGCACTGGCAGCCGATGCACTTCTGTT
GCATGGGTACCGGAGCGTGAAGGAATCTTTGTTGTTAGCCATTCTGATGGAAATCTGTAT
GTGTACGATAAATGCAAAGATGGAAACACTGAGTGTACATTCCCAGCTATAAAGGATCCG
GCTCAGTTAATGATTTCACATGCAAAGTCCAGCAAGAGCAACCCAATTGCTAGATGGCAT
GTTTGCCAAGGTTCAATCAACGCCATCTCCTTTTCACCAGATGGAGCATATTTAGCAACT
GTTGGGCGAGATGGTTATTTGAGAGTGTTTGACTTTTCGAAGGAGCAACTAATATTTGGT
GGGAAAAGTTATTATGGTGCACTATTGTGTTGCACATGGAGCTCGGATGGCAAATATCTG
TTGACTGGTGGTGAAGATGATCTTGTGCAGGTATGGAGCATGGATGACAGAAAGATAGTC
GCGTGGGGCGAAGGGCATAATTCCTGGGTCAGTGGAGTTTCTTTTGATTCGTATTGGTCT
CCTCCGAATTCTGATGGAACAGGAGAAAATACCGTGTATCGTTTTGGTTCTGTTGGTCAG
GACACACAACTGCTTCTGTGGGACCTGGCATTGGATGAGATTGCTGTCCCACTACGACAT
CCTTCCAGTGGCTCACCAACTTTTAGTAGCGGCAGCCCTTCTGCACATTGGGACAATGCA
TGTCTCCCAACAGGTGTTCTTCAACCTTCTCCAAGAATGCGAGATGTGCCAAAGCTCTCA
CCCCTTGTTGCCCACCGAGTACATGTGGATCCACTCTCAGGTCTGGTGTTCACTAACGAA
TCAATTCTCACTATTTGTCGTGAGGGACTGATCAAAATCTGGGTAAGACCTGATCAGAAC
GAAAACAATCATCAGTCAAACTCTTCGGAGTTAGTTTTAGGTAACCCTGTTTCAAAGGAT
AGGGTGATCACAACTTCAAATAAAGCAACCGGTTCCAGCTTCAAGCAATCTTCAGCTGTT
GTCTTCACATGA

Peptide Sequence

PEP ID

Os12t0172500-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:3673051:3679299:-1 gene:Os12g0172500 transcript:Os12t0172500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsWD40-195 description:WD40 repeat-like domain containing protein. (Os12t0172500-01)
Sequence

MAAAANSSASAAGAGGGSAAAAGLKTYFKTPEGRYKLQYEKTHSAAVLHYNHGGKTVSQL
TVAYLKEKPAGQGSTPSTPSSSSGMRSAAARLLGSGNGNRTLSFVGGNGVSRAVSGSSRI
GGGLGTSGGIGSSQAVANYDGKGTYIIFNTADTLFISDLNSQDKDPIKSIHFSNSNPLCH
AFDPEAKEGHDLIIGMGSGDVYSMSLRQQLQDSGRKPVAAQHYNKGDKDGTSTGSRCTSV
AWVPEREGIFVVSHSDGNLYVYDKCKDGNTECTFPAIKDPAQLMISHAKSSKSNPIARWH
VCQGSINAISFSPDGAYLATVGRDGYLRVFDFSKEQLIFGGKSYYGALLCCTWSSDGKYL
LTGGEDDLVQVWSMDDRKIVAWGEGHNSWVSGVSFDSYWSPPNSDGTGENTVYRFGSVGQ
DTQLLLWDLALDEIAVPLRHPSSGSPTFSSGSPSAHWDNACLPTGVLQPSPRMRDVPKLS
PLVAHRVHVDPLSGLVFTNESILTICREGLIKIWVRPDQNENNHQSNSSELVLGNPVSKD
RVITTSNKATGSSFKQSSAVVFT

Transcript Sequence

Transcript ID

Os12t0172500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:3673051:3679299:-1 gene:Os12g0172500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsWD40-195 description:WD40 repeat-like domain containing protein. (Os12t0172500-01)
Sequence

ATTTTCCTCCTCCTCGCCTCGGTCTCCTCTCCTCTCCTCTCCCAAATCGAAGCCGCCTCC
TCCTCCGCCTCCGCCGCCCTCCTCGCCGCCGCGTGGATCCATCTCATCCCCTCGCCGCCG
AAACCCTAGACCCGCGCTTCCATGGTGGTATGACCGGTTGGCCTCGCGATTGGGGGGTGG
GAAGCGGTGCGGTGGTGGTGGTGGTTAGGGTAGCAGAGGCATTCGGCGGGCGATCGCCGT
GAAGCGGGTGTGTGTGGGGGCCAGCGGTGGCGCCGGGCATGGCGGCAGCGGCGAATTCCT
CGGCCTCCGCGGCGGGGGCCGGCGGCGGCTCCGCGGCGGCGGCCGGGCTCAAGACCTACT
TCAAGACCCCCGAGGGGAGGTACAAGCTGCAGTACGAGAAGACGCACTCCGCCGCCGTGC
TTCACTACAACCACGGCGGGAAGACCGTCTCGCAGTTGACGGTAGCGTATCTCAAGGAGA
AGCCTGCCGGACAGGGCTCCACGCCTTCCACGCCAAGCTCCAGCAGCGGGATGCGTTCTG
CAGCAGCGAGGCTTCTTGGCTCTGGGAATGGTAACCGGACGCTTAGCTTTGTTGGGGGAA
ATGGTGTAAGCCGGGCTGTGTCTGGGAGCAGCCGCATTGGGGGTGGCCTTGGTACATCCG
GAGGCATTGGTAGTTCACAAGCTGTGGCAAATTACGATGGCAAGGGTACATACATCATTT
TCAACACCGCTGATACACTATTCATCAGTGACCTCAATTCTCAAGACAAGGATCCAATAA
AGTCCATCCATTTCAGCAACTCGAACCCACTATGCCATGCATTCGACCCAGAGGCCAAGG
AGGGACATGACCTGATCATTGGTATGGGGTCAGGGGATGTCTATTCAATGTCACTGAGGC
AACAATTGCAAGATTCTGGAAGGAAGCCTGTTGCGGCCCAACATTACAACAAGGGTGATA
AAGATGGAACAAGCACTGGCAGCCGATGCACTTCTGTTGCATGGGTACCGGAGCGTGAAG
GAATCTTTGTTGTTAGCCATTCTGATGGAAATCTGTATGTGTACGATAAATGCAAAGATG
GAAACACTGAGTGTACATTCCCAGCTATAAAGGATCCGGCTCAGTTAATGATTTCACATG
CAAAGTCCAGCAAGAGCAACCCAATTGCTAGATGGCATGTTTGCCAAGGTTCAATCAACG
CCATCTCCTTTTCACCAGATGGAGCATATTTAGCAACTGTTGGGCGAGATGGTTATTTGA
GAGTGTTTGACTTTTCGAAGGAGCAACTAATATTTGGTGGGAAAAGTTATTATGGTGCAC
TATTGTGTTGCACATGGAGCTCGGATGGCAAATATCTGTTGACTGGTGGTGAAGATGATC
TTGTGCAGGTATGGAGCATGGATGACAGAAAGATAGTCGCGTGGGGCGAAGGGCATAATT
CCTGGGTCAGTGGAGTTTCTTTTGATTCGTATTGGTCTCCTCCGAATTCTGATGGAACAG
GAGAAAATACCGTGTATCGTTTTGGTTCTGTTGGTCAGGACACACAACTGCTTCTGTGGG
ACCTGGCATTGGATGAGATTGCTGTCCCACTACGACATCCTTCCAGTGGCTCACCAACTT
TTAGTAGCGGCAGCCCTTCTGCACATTGGGACAATGCATGTCTCCCAACAGGTGTTCTTC
AACCTTCTCCAAGAATGCGAGATGTGCCAAAGCTCTCACCCCTTGTTGCCCACCGAGTAC
ATGTGGATCCACTCTCAGGTCTGGTGTTCACTAACGAATCAATTCTCACTATTTGTCGTG
AGGGACTGATCAAAATCTGGGTAAGACCTGATCAGAACGAAAACAATCATCAGTCAAACT
CTTCGGAGTTAGTTTTAGGTAACCCTGTTTCAAAGGATAGGGTGATCACAACTTCAAATA
AAGCAACCGGTTCCAGCTTCAAGCAATCTTCAGCTGTTGTCTTCACATGACAAAAGTGTT
CTGGTGGGCACATTGCTCTGGTAATCTGGTTAATTGATCATCGGTGGTCATGTTTCTTAC
TAACACCGTGATTTTGGGAAGGGGGTGGGAGGAACTCTTGCTGGTGATGGAGCCGCTCAT
TTTGCGTGGCCAGATATGCCAGTGTTGCCATTTGTGTGGCTCAATGGAATAATGGGGTAT
TCTCCTGTACAGAGATACATATAGTCCAAGATAAAATGTACAATTTCACC