Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0170400-01
CDS Infomation	cds chromosome:IRGSP-1.0:12:3580411:3582838:1 gene:Os12g0170400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALUMINIUM RESISTANCE TRANSCRIPTION FACTOR 1 description:C2H2 zinc-finger transcription factor , Al tolerance (Os12t0170400-01)
Sequence	ATGGATCGCGACCAGATGACGAACACGATGCGCGATCAGGCTGCGAACCTGACCTCCATG AATCCTCTCTTCTACCCGTTCATGGCGGATGACGCTCTCCTCGGCATGGCGCCGCCGCCG CCGCAGCAGCTGCTGCCGTCGGTTAGCATCCAGCACATGGACTGGAGCCCGGACACGATG CTGGACAACCTCACCTTCATCGAGGAGAAGATCCGGCAGGTCAAGGACGTCATCCGATCC ATGGCCGGCCGCCGCGCCTCGTCGTCGTCGGCGGCGACGCCGGAGCAGCAGCTTGTCAAC GCCGACCTGACATGCCTCATCGTCCAGCTCATCTCCACCGCCGGCAGCCTCCTCCCGTCG CTCAAGAACTCCTCGTTCCTCAGCCGCACCACCCCGCCGCCCGCCGCCGCGGCCGGAGCC GCACAAGCGGTCAGCCTCGCCGCCGGCGAGAGCTCCAGCTCGGCTCGTAATAACGAGACG AACAGGGAAGATGAGGAGGAGCAGATGGGTAGCCCCGACTACGACGAGCTCTTCAAGGTA TGGACTAACGGCGGCGCCATGGACGAATGCGTCGGCGCTGCCGGCGACGAGCAGGATGCG AGGGAGAATCCGGCGGCGGCGGCGGAGGAGGAGAAGTACGAGGTGCTGCAGCTGGAGGAG GACGAGATCCTGGCGCCGCACACGCACTTCTGCGGCATCTGCGGCAAGGGGTTCAAGCGC GACGCGAACCTGCGGATGCACATGCGCGGGCACGGCGACGAGTACAAGAGCGCGGCGGCG CTGGCGAAGCCGCCGCCGCCGCCGGAGGGGGAGGAGCAGCCGCCGCAGCCGGAGAGGAGG TACTCGTGCCCGCACGCCGGGTGCAAGCGGAACCGGATGCACGCGAGCTTCCAGCCGCTG AAGACGATCCTGTGCGTGAAGAACCACTACAAGCGGAGCCACTGCGAGAAGCGCCATGTC TGCGGCCGCTGCGGCGCCAAGCGCTTCTCCGTCATGGCCGACCTCAAGACCCACGAGAAG CACTGCGGCCGCGACCGCTGGCTCTGCTCCTGCGGCACCAGCTTCTCCCGCAAGGACAAG CTCTTCGCCCACGTCGCCCTCTTCCAGGGCCACGCCCCCGCTCTCCCCCCTCCCCCGCCG CCGCCGACGTCGGGTCGCCGCCGCCACAAGCAGGAGGAGCCGGAGTTCACGTGGGGCGGC GGCGGCGGCAATGAGTTTCTTGACGTCAAAGGGATCGCCGGCGTCGGGTCCGGCTCCGGT GGTGGGGATGAGTTCTTCTCCGCGGGAAGCTTCGGCGCCATGGATTTCGGATTCGGGCAG TTGGATGCTTCGCTCGCGATGCTGCTGCCATCCGAGCAATTCGCGGGTGATCATCAGGAG GAGAATGGTGACAAGTGA

Peptide Sequence

PEP ID	Os12t0170400-01
PEP Infomation	pep chromosome:IRGSP-1.0:12:3580411:3582838:1 gene:Os12g0170400 transcript:Os12t0170400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALUMINIUM RESISTANCE TRANSCRIPTION FACTOR 1 description:C2H2 zinc-finger transcription factor , Al tolerance (Os12t0170400-01)
Sequence	MDRDQMTNTMRDQAANLTSMNPLFYPFMADDALLGMAPPPPQQLLPSVSIQHMDWSPDTM LDNLTFIEEKIRQVKDVIRSMAGRRASSSSAATPEQQLVNADLTCLIVQLISTAGSLLPS LKNSSFLSRTTPPPAAAAGAAQAVSLAAGESSSSARNNETNREDEEEQMGSPDYDELFKV WTNGGAMDECVGAAGDEQDARENPAAAAEEEKYEVLQLEEDEILAPHTHFCGICGKGFKR DANLRMHMRGHGDEYKSAAALAKPPPPPEGEEQPPQPERRYSCPHAGCKRNRMHASFQPL KTILCVKNHYKRSHCEKRHVCGRCGAKRFSVMADLKTHEKHCGRDRWLCSCGTSFSRKDK LFAHVALFQGHAPALPPPPPPPTSGRRRHKQEEPEFTWGGGGGNEFLDVKGIAGVGSGSG GGDEFFSAGSFGAMDFGFGQLDASLAMLLPSEQFAGDHQEENGDK

Transcript Sequence

Transcript ID	Os12t0170400-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:3580411:3582838:1 gene:Os12g0170400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALUMINIUM RESISTANCE TRANSCRIPTION FACTOR 1 description:C2H2 zinc-finger transcription factor , Al tolerance (Os12t0170400-01)
Sequence	GGCGTCCATGGCGACGAGCTGGGAGTGATTCCCCCTGCTTGATTTGATTGGATTTCAGAG GCGCCATCTCTTTTCCTAATAAAGATCACGCGAGATTATTCAGAAGCTTGCAATGGATCG CGACCAGATGACGAACACGATGCGCGATCAGGCTGCGAACCTGACCTCCATGAATCCTCT CTTCTACCCGTTCATGGCGGATGACGCTCTCCTCGGCATGGCGCCGCCGCCGCCGCAGCA GCTGCTGCCGTCGGTTAGCATCCAGCACATGGACTGGAGCCCGGACACGATGCTGGACAA CCTCACCTTCATCGAGGAGAAGATCCGGCAGGTCAAGGACGTCATCCGATCCATGGCCGG CCGCCGCGCCTCGTCGTCGTCGGCGGCGACGCCGGAGCAGCAGCTTGTCAACGCCGACCT GACATGCCTCATCGTCCAGCTCATCTCCACCGCCGGCAGCCTCCTCCCGTCGCTCAAGAA CTCCTCGTTCCTCAGCCGCACCACCCCGCCGCCCGCCGCCGCGGCCGGAGCCGCACAAGC GGTCAGCCTCGCCGCCGGCGAGAGCTCCAGCTCGGCTCGTAATAACGAGACGAACAGGGA AGATGAGGAGGAGCAGATGGGTAGCCCCGACTACGACGAGCTCTTCAAGGTATGGACTAA CGGCGGCGCCATGGACGAATGCGTCGGCGCTGCCGGCGACGAGCAGGATGCGAGGGAGAA TCCGGCGGCGGCGGCGGAGGAGGAGAAGTACGAGGTGCTGCAGCTGGAGGAGGACGAGAT CCTGGCGCCGCACACGCACTTCTGCGGCATCTGCGGCAAGGGGTTCAAGCGCGACGCGAA CCTGCGGATGCACATGCGCGGGCACGGCGACGAGTACAAGAGCGCGGCGGCGCTGGCGAA GCCGCCGCCGCCGCCGGAGGGGGAGGAGCAGCCGCCGCAGCCGGAGAGGAGGTACTCGTG CCCGCACGCCGGGTGCAAGCGGAACCGGATGCACGCGAGCTTCCAGCCGCTGAAGACGAT CCTGTGCGTGAAGAACCACTACAAGCGGAGCCACTGCGAGAAGCGCCATGTCTGCGGCCG CTGCGGCGCCAAGCGCTTCTCCGTCATGGCCGACCTCAAGACCCACGAGAAGCACTGCGG CCGCGACCGCTGGCTCTGCTCCTGCGGCACCAGCTTCTCCCGCAAGGACAAGCTCTTCGC CCACGTCGCCCTCTTCCAGGGCCACGCCCCCGCTCTCCCCCCTCCCCCGCCGCCGCCGAC GTCGGGTCGCCGCCGCCACAAGCAGGAGGAGCCGGAGTTCACGTGGGGCGGCGGCGGCGG CAATGAGTTTCTTGACGTCAAAGGGATCGCCGGCGTCGGGTCCGGCTCCGGTGGTGGGGA TGAGTTCTTCTCCGCGGGAAGCTTCGGCGCCATGGATTTCGGATTCGGGCAGTTGGATGC TTCGCTCGCGATGCTGCTGCCATCCGAGCAATTCGCGGGTGATCATCAGGAGGAGAATGG TGACAAGTGAAGGTGCACATGATGCGTAGCGAGTTGCATATGATCATATATATATATATA TATATATATATATGACGTATGTATTTCATGGTGTAATAGCATTGTGTTATCTAAAGTGGA AGAAGTTGTTCTTCCCATCTTGTACCATCTTATATGCACTTCTTTATTAAGATAGTTATG C