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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0170300-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:3573479:3577071:-1 gene:Os12g0170300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Sodium Bile acid symporter family protein, expressed. (Os12t0170300-01)
Sequence

TCGCCGCGCGCCACGCGCGGGAACCGGACGAACACCCACCTCCCACCGCCCACCGCCCAC
CGCCGCGCCGGCCATGGCTCCCCTCCTCCTCCTCCTCCCCCCACTCCGCCTCCTCCCCGC
CACCCTCCTCCGCGCCACAAGCCGCCCGGCGTCGCCAAGGCGCGGCCTCTCCTACTCCTA
CCCCAGGCGCGTCGCCGCCGTCCTGCGGCGGGGCTGTACCCGGCGTACGTGACGGCCGGC
GCCGCGGTGGCCGTGGCGCGGCCCGATGCGTTCCGGTGGTTCGTCGCGCTGGCGCCGGGG
TCGTACACGTTCGCCCTGGGACTCATCATGCTCGCCATGGGCCTCACCCTCGAGCTCCGG
GAGTTCTTGGCTCTCCTCCGCGAGAGGCCCCTCTCCATATTGTTTGGTTGTGCTGCACAG
TACACCATAATGCCTGCCTTTGGAGCAATTGTTAGCCGGGTGCTGGGGCTCTCTCCACCA
ATATCAGTGGGACTAATTCTGCTAGGATGCTGTCCTGGAGGAACTGCTTCCAATGTGGTG
ACTTTAGTTGCTAAAGGTGATGTTCCACTATCAATCGTCATGACTGTGTGCAGCACTCTT
GGTGCAGTGTTCCTTACTCCACTGTTAACAAAAATTCTTGCTGGTGCTTATGTTCCAGTG
GACGCGGTGAAGCTTTCCTTAAGTACTCTGCAGGTGGTTGTTGCTCCAATTCTATTAGGT
TCCTCTATACAAAGTGCATTCCCATCAGTAGTTAAATTTGTTACTCCTTTTGCCCCTCTT
CTAGCGGTCTTAACTTCATCACTTCTGGCGTGCAGCGTGTTCTCTGAGAACTTTGTACGG
CTGAGATCAACAATTGCTGATGCATCATATGGGAATGGAGGCCTGTTTTCTGGGGATATT
GGGGTTGTGATGCTGTCTGTCTTCTTGCTGCACTGTGCTGGTTTTGTTGTCGGGTACACG
ACAGCAGCTATAGGTGGTTTCAAGGAAAGACAAAGGAGAGCGATATCCATTGAGGTAGGG
ATGCAGAATTCATCCTTAGGAGTAGTATTAGCAACTGCACATTTCTCCTCTTCCTTGGTC
GCCTTGCCAGCTGCACTCTCCGCTGTCATCATGAACATAATGGGTAGCACATTAGGTCTT
GTATGGCAATTTATGACACCGCCTGATTCGAAGAACGAAAACCGTTGA

Peptide Sequence

PEP ID

Os12t0170300-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:3573479:3577071:-1 gene:Os12g0170300 transcript:Os12t0170300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Sodium Bile acid symporter family protein, expressed. (Os12t0170300-01)
Sequence

SPRATRGNRTNTHLPPPTAHRRAGHGSPPPPPPPTPPPPRHPPPRHKPPGVAKARPLLLL
PQARRRRPAAGLYPAYVTAGAAVAVARPDAFRWFVALAPGSYTFALGLIMLAMGLTLELR
EFLALLRERPLSILFGCAAQYTIMPAFGAIVSRVLGLSPPISVGLILLGCCPGGTASNVV
TLVAKGDVPLSIVMTVCSTLGAVFLTPLLTKILAGAYVPVDAVKLSLSTLQVVVAPILLG
SSIQSAFPSVVKFVTPFAPLLAVLTSSLLACSVFSENFVRLRSTIADASYGNGGLFSGDI
GVVMLSVFLLHCAGFVVGYTTAAIGGFKERQRRAISIEVGMQNSSLGVVLATAHFSSSLV
ALPAALSAVIMNIMGSTLGLVWQFMTPPDSKNENR

Transcript Sequence

Transcript ID

Os12t0170300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:3573479:3577071:-1 gene:Os12g0170300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Sodium Bile acid symporter family protein, expressed. (Os12t0170300-01)
Sequence

CTCGCCGCGCGCCACGCGCGGGAACCGGACGAACACCCACCTCCCACCGCCCACCGCCCA
CCGCCGCGCCGGCCATGGCTCCCCTCCTCCTCCTCCTCCCCCCACTCCGCCTCCTCCCCG
CCACCCTCCTCCGCGCCACAAGCCGCCCGGCGTCGCCAAGGCGCGGCCTCTCCTACTCCT
ACCCCAGGCGCGTCGCCGCCGTCCTGCGGCGGGGCTGTACCCGGCGTACGTGACGGCCGG
CGCCGCGGTGGCCGTGGCGCGGCCCGATGCGTTCCGGTGGTTCGTCGCGCTGGCGCCGGG
GTCGTACACGTTCGCCCTGGGACTCATCATGCTCGCCATGGGCCTCACCCTCGAGCTCCG
GGAGTTCTTGGCTCTCCTCCGCGAGAGGCCCCTCTCCATATTGTTTGGTTGTGCTGCACA
GTACACCATAATGCCTGCCTTTGGAGCAATTGTTAGCCGGGTGCTGGGGCTCTCTCCACC
AATATCAGTGGGACTAATTCTGCTAGGATGCTGTCCTGGAGGAACTGCTTCCAATGTGGT
GACTTTAGTTGCTAAAGGTGATGTTCCACTATCAATCGTCATGACTGTGTGCAGCACTCT
TGGTGCAGTGTTCCTTACTCCACTGTTAACAAAAATTCTTGCTGGTGCTTATGTTCCAGT
GGACGCGGTGAAGCTTTCCTTAAGTACTCTGCAGGTGGTTGTTGCTCCAATTCTATTAGG
TTCCTCTATACAAAGTGCATTCCCATCAGTAGTTAAATTTGTTACTCCTTTTGCCCCTCT
TCTAGCGGTCTTAACTTCATCACTTCTGGCGTGCAGCGTGTTCTCTGAGAACTTTGTACG
GCTGAGATCAACAATTGCTGATGCATCATATGGGAATGGAGGCCTGTTTTCTGGGGATAT
TGGGGTTGTGATGCTGTCTGTCTTCTTGCTGCACTGTGCTGGTTTTGTTGTCGGGTACAC
GACAGCAGCTATAGGTGGTTTCAAGGAAAGACAAAGGAGAGCGATATCCATTGAGGTAGG
GATGCAGAATTCATCCTTAGGAGTAGTATTAGCAACTGCACATTTCTCCTCTTCCTTGGT
CGCCTTGCCAGCTGCACTCTCCGCTGTCATCATGAACATAATGGGTAGCACATTAGGTCT
TGTATGGCAATTTATGACACCGCCTGATTCGAAGAACGAAAACCGTTGACTCGCGTGATG
TATGACCTGCTCCTACTTTGTGTGGTTAATCTCCTGTCATAGTCTGCTGTAAGAAACATT
AGAAACGTTAAAACCATGCCGTGTATATCCTCAACTTTCAGCCCTTCCTGATGTCAACTT
GTCAAGTAGGGATTGTACATAGTTTTGGAATGTTGATTTTCTGAACTTTTGCTGATATAC
AGTCTAAAATGCACATGTGGCCAAATCC