Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0169100-01
CDS Infomation	cds chromosome:IRGSP-1.0:12:3514879:3521716:-1 gene:Os12g0169100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF869, plant family protein. (Os12t0169100-01);Hypothetical conserved gene. (Os12t0169100-02)
Sequence	ATGGTTATGGATCGAACGAGTTGGCTCTGGAGGCGCAAGCCGTCAGACAAGAGCCCCGGA GGCGCCGAGAACACCGTGTCTGTGTCGTCACATTCTGAGCACTACTCTGATGATCAGGAG GTTCTGAGGCCTGTCTCAAACAATGCTTCACCACATCTTGGCCAATCACCTGGAATGCCT TCAAGGGTTAGGGATGATGGGACCCAAGAGATTGGAGTCACAAAACCCTCGAATGAGAAG TTAGCATTGGGATTTAAACTAAATGATTCTTCTCCACGGCATGGTCAATCATCAGAGCCA CAGTCATCTTCAAATGTCAGAGATGAAGATGTAAAGGAGAACTTGAAGAGTTTGAATGAT AAACTTGCTGCTGCATTTTTGACAATTAATGCTAAAGAGGAATTGGTGAGGCAGCACGCT AAAGTCACAGAAGAGGCTGTTTTGGGTTGGGAACAAGCTGAATCTGAAGTTGCTGCCCTA AAGAAGCTACTTGAAGCTTCAGCCCAGAAGAATGGTTCCCTCGAGGTTCAAGTCAGCCAC TTAGCTGAAAAAAATGCTTCTCTCGAGGTTCAAGTCAGCCGCTTAGATGAGGCTCTGAAG GAATGTGTCAGGCAGCTGCACCTAGCACAGGAAGATCAAGCGGAGAAAGTCCATGATGTA GTTACCAAGTCCCAGGAGTTGGAGTCTGAGAACTCAAAGCTCCAAAACCGCATCACTGAA CTGAAGAAGCAGCTGGAAACCACGAAACTAGAAGCCTCCAACATGTCTATAGATCATGAT CTGCAAGAGAAGTTTCAGGCAATTAAGAAAGAGAACATGGATCTCAAGTCCAAGCTTCTT GTACAGTCCAAGGACCTGAAGATACTATCATTGGAAAGAGACTTGAGCAATCAAGCAGCG GAAACAGCAAGCAAGCAACATTTGGAAAACGTGAAAAAAATTGCAAGGCTTGAGGCAGAA TGCCGCAGATTACATCATCTAACTCGCAAAGCAACATTAATTAATGATTCTAGGCCTCTG GCAAACAATACTTGTGTGGAGTCACTTACTGATAGCCAATCTGACAGTGCTGAACGCATG GCTGCTGTTGATAATGAACTGCGGAATTCCGACTCATGGGCATCTGCTCTGGTAGCTGAG TTTGATCAGTTCAAGAATGGAAATGCTGATGAGAAAAATCTTGTGAACAATCCTGTTGTG ATTGATCTAATGGATGATTTCCTTGAGATGGAGAGGTTAGCTGCATTGCCTGAATCAGAT CGCACAAGCTCTACCTTCGATATGGAAACAGATTCTGATAAAGCTGTGACCAGAAACAGC TCCTCTAAACTTGAAACTGAAGAGTTGAGGAATCAGGTGGCTGATTTGCATGCACAGGTT GAGAAGATTGAAAGTGAGAAAAAGGAGCTTGAGATGGCACTAATGGAGGCAAGAAATCAA CTTGACATCTCCTGCAATGCACTAGTGGCAGCAAAGAACAGGCTAGTTGAAATGCAAATG GAGTTGGACTTGGCAAATGACTCCAAGCATGATGCTTTGAGGGATTTTGAGGGATTGAAC TCAGAGAAGAAGGCTTTGGAGTTTCAACTGGAGTCTAAATCTGTACGAGTGGAGGAGTTA CTTCAGGTGGTGGCTTCATTGGAAGAAAACACAGATAAAAAGGAATTGGAGTCACAATTA GAACTGCTGTCTGCGGAAGCCAAAGAGCTTCGTCTGACTGTAACATCATTATTAGAGAAG ATTGAAGCTGAAAGGTCTCTTTCTGTGCAGCATCAAGCAGAAGCAGTGGCTGCATGTAAT GCGAAAGAATCGTTGGAGGAACAGCTATATTCAGCAAACACTGAAGTAGAGAGATTGCAT GTCATTGTCAAAGAACTGGAGGATGAGGTAGAAAAAGAGAAGATGAGGCAGGAAGAACTC GTGGCAGAATTAGAAATGAAGATGGAAACAGCTGTCGAGGCTATTAAAGAATCATTGGAG GCACAACTATGTGCAGCAAACACTGAAGTAGAGAGACTGAATAGCATAGTTCAGGCACTA GAGAACGATATAGAAAAAGAGAAGGCGCTGCATAAAGAACTGACAGCACAGTTAGAGGTG AAGTTTGAAGAAGAGAAAGCTCGTTCTGTTCAGACTGTTAAGGAATCAATGGAGGCACAG CTATGCTCATCAAACACCGAAGTACTAAAACTGCGTGACATTGTTAAAGCACTAGAAAAT GAGGTAGAAAAGGAGAAGGCACTGCATGAAGATCTTTCAGCACAGTTGGAGGCGAAGATC GAAGCAGAGAGAACTTTTTCTGTGGAGGCTATTAAAGAATCATTTCAGTCAGAACTCCAG TCAGTGAACTCAGAAGTTGTGGAGCTGCGCGGTATGGTGACTGCACTTGAGCATGAGGTG GTAAAGGAGAAAACATTTTCTGCAGAGCTCCAAATGCAGCTAGAAGCTCTGGAGGCAATA AAAAGGGTGTTGGAGTCTGAGATTGAGTCTGCACATCAGGATAACAGAAAGCTCAATGAT AAGGTGAAGTCTTTTGAAGCAAAACTGAAAAAACAGGTGTCTTCAGCGGTGGACTTCACA GCCAAGGAAGAAGCCATGCAGTCAGAGAGAAGGGCCATGAAGCAACAACTTGAAGCAGCA AAGATGGAAGTTGGAAAGCTGACAAACAAGGTGAGCTTGCTCCAAGGGGAGGTGTTACAG GAGAGATTGTTATCAGAAGAGTTCGAACAAGAATACCACAAGCTGGAGGCTCGGCTGTCA AGGGATAGCCGGGACGCGAAGCTCTGGCGACTCGCAAATTCAAATGGGGGTCTGAAGGCC AAGCAGGAGAAGGAACTTGCAAATGCTGCTGGGAAGCTCGCAGAATGCCAGAAGACCATA GCTTCTCTCGGCCGTCAGTTGAAATCATTGACCGACATCGACAATACGATTGTGGAGCCT GAGAGACTGGAACCCAGAGAAATCAGAGAAATGCCGCTCGATTTTAGAAATAGTGATGCT GACTTTGCAGTATTTGCAGATGAGTTATATGATTTTGATCTTCCAAAGGTCAACAGCAGC TGCTTTTCGCCGTTACCGTCGATCCAGCCCTCTTCGCCACCTTCAGAAATGTCAGTATTT GCAGGGGGCCTGTCTTCACTTAGTAGTTTCAGAAGCAAAAGAAGAAAGTAA

Peptide Sequence

PEP ID	Os12t0169100-01
PEP Infomation	pep chromosome:IRGSP-1.0:12:3514879:3521716:-1 gene:Os12g0169100 transcript:Os12t0169100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF869, plant family protein. (Os12t0169100-01);Hypothetical conserved gene. (Os12t0169100-02)
Sequence	MVMDRTSWLWRRKPSDKSPGGAENTVSVSSHSEHYSDDQEVLRPVSNNASPHLGQSPGMP SRVRDDGTQEIGVTKPSNEKLALGFKLNDSSPRHGQSSEPQSSSNVRDEDVKENLKSLND KLAAAFLTINAKEELVRQHAKVTEEAVLGWEQAESEVAALKKLLEASAQKNGSLEVQVSH LAEKNASLEVQVSRLDEALKECVRQLHLAQEDQAEKVHDVVTKSQELESENSKLQNRITE LKKQLETTKLEASNMSIDHDLQEKFQAIKKENMDLKSKLLVQSKDLKILSLERDLSNQAA ETASKQHLENVKKIARLEAECRRLHHLTRKATLINDSRPLANNTCVESLTDSQSDSAERM AAVDNELRNSDSWASALVAEFDQFKNGNADEKNLVNNPVVIDLMDDFLEMERLAALPESD RTSSTFDMETDSDKAVTRNSSSKLETEELRNQVADLHAQVEKIESEKKELEMALMEARNQ LDISCNALVAAKNRLVEMQMELDLANDSKHDALRDFEGLNSEKKALEFQLESKSVRVEEL LQVVASLEENTDKKELESQLELLSAEAKELRLTVTSLLEKIEAERSLSVQHQAEAVAACN AKESLEEQLYSANTEVERLHVIVKELEDEVEKEKMRQEELVAELEMKMETAVEAIKESLE AQLCAANTEVERLNSIVQALENDIEKEKALHKELTAQLEVKFEEEKARSVQTVKESMEAQ LCSSNTEVLKLRDIVKALENEVEKEKALHEDLSAQLEAKIEAERTFSVEAIKESFQSELQ SVNSEVVELRGMVTALEHEVVKEKTFSAELQMQLEALEAIKRVLESEIESAHQDNRKLND KVKSFEAKLKKQVSSAVDFTAKEEAMQSERRAMKQQLEAAKMEVGKLTNKVSLLQGEVLQ ERLLSEEFEQEYHKLEARLSRDSRDAKLWRLANSNGGLKAKQEKELANAAGKLAECQKTI ASLGRQLKSLTDIDNTIVEPERLEPREIREMPLDFRNSDADFAVFADELYDFDLPKVNSS CFSPLPSIQPSSPPSEMSVFAGGLSSLSSFRSKRRK

Transcript Sequence

Transcript ID	Os12t0169100-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:3514879:3521716:-1 gene:Os12g0169100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF869, plant family protein. (Os12t0169100-01);Hypothetical conserved gene. (Os12t0169100-02)
Sequence	AGTAGTAGTAGTATCCGAGAAAGCTGCGAGCTTTTCTTCCCCGATTCGAGCTGCACGCGC GGGAAGGAGGAAGGTAATGCGGGTCGCCAATGGCGGATGATGCAGACCAGCAACCTGCAA CTGGGCGAGCTGCTGATCAATGAAAAGCAGCATACGGTGGTAATTAAGAAATCAGGGGTT TCAGCTCTGATCTGTTGAACAGTTGATGGTTATGGATCGAACGAGTTGGCTCTGGAGGCG CAAGCCGTCAGACAAGAGCCCCGGAGGCGCCGAGAACACCGTGTCTGTGTCGTCACATTC TGAGCACTACTCTGATGATCAGGAGGTTCTGAGGCCTGTCTCAAACAATGCTTCACCACA TCTTGGCCAATCACCTGGAATGCCTTCAAGGGTTAGGGATGATGGGACCCAAGAGATTGG AGTCACAAAACCCTCGAATGAGAAGTTAGCATTGGGATTTAAACTAAATGATTCTTCTCC ACGGCATGGTCAATCATCAGAGCCACAGTCATCTTCAAATGTCAGAGATGAAGATGTAAA GGAGAACTTGAAGAGTTTGAATGATAAACTTGCTGCTGCATTTTTGACAATTAATGCTAA AGAGGAATTGGTGAGGCAGCACGCTAAAGTCACAGAAGAGGCTGTTTTGGGTTGGGAACA AGCTGAATCTGAAGTTGCTGCCCTAAAGAAGCTACTTGAAGCTTCAGCCCAGAAGAATGG TTCCCTCGAGGTTCAAGTCAGCCACTTAGCTGAAAAAAATGCTTCTCTCGAGGTTCAAGT CAGCCGCTTAGATGAGGCTCTGAAGGAATGTGTCAGGCAGCTGCACCTAGCACAGGAAGA TCAAGCGGAGAAAGTCCATGATGTAGTTACCAAGTCCCAGGAGTTGGAGTCTGAGAACTC AAAGCTCCAAAACCGCATCACTGAACTGAAGAAGCAGCTGGAAACCACGAAACTAGAAGC CTCCAACATGTCTATAGATCATGATCTGCAAGAGAAGTTTCAGGCAATTAAGAAAGAGAA CATGGATCTCAAGTCCAAGCTTCTTGTACAGTCCAAGGACCTGAAGATACTATCATTGGA AAGAGACTTGAGCAATCAAGCAGCGGAAACAGCAAGCAAGCAACATTTGGAAAACGTGAA AAAAATTGCAAGGCTTGAGGCAGAATGCCGCAGATTACATCATCTAACTCGCAAAGCAAC ATTAATTAATGATTCTAGGCCTCTGGCAAACAATACTTGTGTGGAGTCACTTACTGATAG CCAATCTGACAGTGCTGAACGCATGGCTGCTGTTGATAATGAACTGCGGAATTCCGACTC ATGGGCATCTGCTCTGGTAGCTGAGTTTGATCAGTTCAAGAATGGAAATGCTGATGAGAA AAATCTTGTGAACAATCCTGTTGTGATTGATCTAATGGATGATTTCCTTGAGATGGAGAG GTTAGCTGCATTGCCTGAATCAGATCGCACAAGCTCTACCTTCGATATGGAAACAGATTC TGATAAAGCTGTGACCAGAAACAGCTCCTCTAAACTTGAAACTGAAGAGTTGAGGAATCA GGTGGCTGATTTGCATGCACAGGTTGAGAAGATTGAAAGTGAGAAAAAGGAGCTTGAGAT GGCACTAATGGAGGCAAGAAATCAACTTGACATCTCCTGCAATGCACTAGTGGCAGCAAA GAACAGGCTAGTTGAAATGCAAATGGAGTTGGACTTGGCAAATGACTCCAAGCATGATGC TTTGAGGGATTTTGAGGGATTGAACTCAGAGAAGAAGGCTTTGGAGTTTCAACTGGAGTC TAAATCTGTACGAGTGGAGGAGTTACTTCAGGTGGTGGCTTCATTGGAAGAAAACACAGA TAAAAAGGAATTGGAGTCACAATTAGAACTGCTGTCTGCGGAAGCCAAAGAGCTTCGTCT GACTGTAACATCATTATTAGAGAAGATTGAAGCTGAAAGGTCTCTTTCTGTGCAGCATCA AGCAGAAGCAGTGGCTGCATGTAATGCGAAAGAATCGTTGGAGGAACAGCTATATTCAGC AAACACTGAAGTAGAGAGATTGCATGTCATTGTCAAAGAACTGGAGGATGAGGTAGAAAA AGAGAAGATGAGGCAGGAAGAACTCGTGGCAGAATTAGAAATGAAGATGGAAACAGCTGT CGAGGCTATTAAAGAATCATTGGAGGCACAACTATGTGCAGCAAACACTGAAGTAGAGAG ACTGAATAGCATAGTTCAGGCACTAGAGAACGATATAGAAAAAGAGAAGGCGCTGCATAA AGAACTGACAGCACAGTTAGAGGTGAAGTTTGAAGAAGAGAAAGCTCGTTCTGTTCAGAC TGTTAAGGAATCAATGGAGGCACAGCTATGCTCATCAAACACCGAAGTACTAAAACTGCG TGACATTGTTAAAGCACTAGAAAATGAGGTAGAAAAGGAGAAGGCACTGCATGAAGATCT TTCAGCACAGTTGGAGGCGAAGATCGAAGCAGAGAGAACTTTTTCTGTGGAGGCTATTAA AGAATCATTTCAGTCAGAACTCCAGTCAGTGAACTCAGAAGTTGTGGAGCTGCGCGGTAT GGTGACTGCACTTGAGCATGAGGTGGTAAAGGAGAAAACATTTTCTGCAGAGCTCCAAAT GCAGCTAGAAGCTCTGGAGGCAATAAAAAGGGTGTTGGAGTCTGAGATTGAGTCTGCACA TCAGGATAACAGAAAGCTCAATGATAAGGTGAAGTCTTTTGAAGCAAAACTGAAAAAACA GGTGTCTTCAGCGGTGGACTTCACAGCCAAGGAAGAAGCCATGCAGTCAGAGAGAAGGGC CATGAAGCAACAACTTGAAGCAGCAAAGATGGAAGTTGGAAAGCTGACAAACAAGGTGAG CTTGCTCCAAGGGGAGGTGTTACAGGAGAGATTGTTATCAGAAGAGTTCGAACAAGAATA CCACAAGCTGGAGGCTCGGCTGTCAAGGGATAGCCGGGACGCGAAGCTCTGGCGACTCGC AAATTCAAATGGGGGTCTGAAGGCCAAGCAGGAGAAGGAACTTGCAAATGCTGCTGGGAA GCTCGCAGAATGCCAGAAGACCATAGCTTCTCTCGGCCGTCAGTTGAAATCATTGACCGA CATCGACAATACGATTGTGGAGCCTGAGAGACTGGAACCCAGAGAAATCAGAGAAATGCC GCTCGATTTTAGAAATAGTGATGCTGACTTTGCAGTATTTGCAGATGAGTTATATGATTT TGATCTTCCAAAGGTCAACAGCAGCTGCTTTTCGCCGTTACCGTCGATCCAGCCCTCTTC GCCACCTTCAGAAATGTCAGTATTTGCAGGGGGCCTGTCTTCACTTAGTAGTTTCAGAAG CAAAAGAAGAAAGTAAAGAGCTGGTGAAAACAAACTGTCCAGATGCTACTAACAGTTCAT GGATGCTCTCATCTGTAGGTAGATCAGTGTACATTTACAGAAACTGATTGTAGATTCTGT GTGCTGAATTCCGTTCCAGCAAGCTCAGTTTTTTTTTCACAGCCTTCTTGATGAGATTTT TACTGTATCAGTGTTGGCTGTTTTGGTGCCAGAAAAAATGGGAAGAAAAATGTAAACTCA GTATCAGTGTGAGACTGCAGAAGTGCAGATACATTGTGGTGTATTTGTGTTGTGCGGCTT ATACTTGCTGTGTGAATTGTGATCTCCATATTACCAATCATACTTATTCTGCCTGATTG