Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0168400-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:3455590:3463006:1 gene:Os12g0168400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:DnaJ domain protein A11 description:Similar to GFA2. (Os12t0168400-01)
Sequence

ATGGCGCGCGCCGCCGCCTCCAGGCTCGCCGCCGCGGCAACCTCCACCTCGACGCTCGAG
ATGTTCTCCCGCCACCTCGCGGCCGCCTCGTCGGCGTGGGGCATCGCTTCGTCGCGGGCT
CCCTATCCAGGGAGGGAGAGGAGGAGCGCGAGCTGGTGGTGCCCTACCAGGTCGTTCCAT
GCCACAAGGGGAATGAATGCAAGGGATTACTATGATGTTCTTGGAGTGAACAAAGATGCA
TCTGCATCAGACATAAAGAAGGCATATTATCTGCTCGCAAAGAAATTCCATCCTGATACT
AATAAAGAAGATGCTGATGCAGAAAAGAAATTTCAAGAAGTTCAGCATGCCTACGAGGTT
TTGAAGGATGATGATAAGCGTGAAACATACGACCAGCTTGGAGCAGAAGCTTATGAGCGC
CAAGCGTCAGGTGGTGGCCCCGATGATTTTTCTGGGAGTCATCCATTTGGTGACATTTTT
GGTGATATGTTTGATAATCCTTTTGCCATGAGAGGAGGTCGAGATGTCAAGGTTCCAATC
AAACTATCATTCATGGAAGCCGTCCAAGGCTGCAGAAAAACTATTGCATATGAGGCTGAT
GTTTTCTGCGATACTTGCAATGGAAGTGGTGTTCCTCCTGGCACTGTACCTCAAACATGT
AAAGCCTGTCGAGGTGCTGGTGTGATATTCATGCAGCGGGGTATAATGAGTATAGAAACT
ACTTGTTCTAGGTGTGGTGGAAGTGGGAAAATTGTGAAGAATTTTTGCAAGACATGCAAG
GGTGAACAGCTAGTGAAGGGGAAAAAATCAGTCAAGCTCGACATAATGGCTGGCATCGAT
GACAATGACACTATGAAGGTTTTTGGCAAGGGTGGTGCAGATGTTGAGCGCAATAAACCT
GGTGATCTCTATGTTACTATCAAGATCAGAGAGGATCCTGTCTTCCGTAGAGAAGGCAAC
CATGTGCATGTTGACGCTATTATAAGCATTGCCCAGGCTGTACTAGGTGGAACTGTCACA
GTACCAACCCTTACGGGCAACGTTTCAGTCAAGGTTCGCCAAGGTACCCAACCAGGAGAA
AAGGTTGTCCTCAGGGGCAAAGGAATAAAAGCACGGAATTCCCCAGCCTATGGGAATCAG
TATATTCACTTCAACGTCCGAGTTCCAACGGATGTGACACAACGACAACGCGAGTTAATG
GAGGAATTTGATAAAGAGGAGTGCAACGAAGGGGAGAGAGTTGCAGCTGCCTCCGGATGA

Peptide Sequence

PEP ID

Os12t0168400-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:3455590:3463006:1 gene:Os12g0168400 transcript:Os12t0168400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:DnaJ domain protein A11 description:Similar to GFA2. (Os12t0168400-01)
Sequence

MARAAASRLAAAATSTSTLEMFSRHLAAASSAWGIASSRAPYPGRERRSASWWCPTRSFH
ATRGMNARDYYDVLGVNKDASASDIKKAYYLLAKKFHPDTNKEDADAEKKFQEVQHAYEV
LKDDDKRETYDQLGAEAYERQASGGGPDDFSGSHPFGDIFGDMFDNPFAMRGGRDVKVPI
KLSFMEAVQGCRKTIAYEADVFCDTCNGSGVPPGTVPQTCKACRGAGVIFMQRGIMSIET
TCSRCGGSGKIVKNFCKTCKGEQLVKGKKSVKLDIMAGIDDNDTMKVFGKGGADVERNKP
GDLYVTIKIREDPVFRREGNHVHVDAIISIAQAVLGGTVTVPTLTGNVSVKVRQGTQPGE
KVVLRGKGIKARNSPAYGNQYIHFNVRVPTDVTQRQRELMEEFDKEECNEGERVAAASG

Transcript Sequence

Transcript ID

Os12t0168400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:3455590:3463006:1 gene:Os12g0168400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:DnaJ domain protein A11 description:Similar to GFA2. (Os12t0168400-01)
Sequence

GGGACCCAACCAACCGCCCTCCCTTCTCCCCCTCCCCACCAAGTAGGGTTTCACCGCCGC
CTCCTCTGCCGCCATGGCGCGCGCCGCCGCCTCCAGGCTCGCCGCCGCGGCAACCTCCAC
CTCGACGCTCGAGATGTTCTCCCGCCACCTCGCGGCCGCCTCGTCGGCGTGGGGCATCGC
TTCGTCGCGGGCTCCCTATCCAGGGAGGGAGAGGAGGAGCGCGAGCTGGTGGTGCCCTAC
CAGGTCGTTCCATGCCACAAGGGGAATGAATGCAAGGGATTACTATGATGTTCTTGGAGT
GAACAAAGATGCATCTGCATCAGACATAAAGAAGGCATATTATCTGCTCGCAAAGAAATT
CCATCCTGATACTAATAAAGAAGATGCTGATGCAGAAAAGAAATTTCAAGAAGTTCAGCA
TGCCTACGAGGTTTTGAAGGATGATGATAAGCGTGAAACATACGACCAGCTTGGAGCAGA
AGCTTATGAGCGCCAAGCGTCAGGTGGTGGCCCCGATGATTTTTCTGGGAGTCATCCATT
TGGTGACATTTTTGGTGATATGTTTGATAATCCTTTTGCCATGAGAGGAGGTCGAGATGT
CAAGGTTCCAATCAAACTATCATTCATGGAAGCCGTCCAAGGCTGCAGAAAAACTATTGC
ATATGAGGCTGATGTTTTCTGCGATACTTGCAATGGAAGTGGTGTTCCTCCTGGCACTGT
ACCTCAAACATGTAAAGCCTGTCGAGGTGCTGGTGTGATATTCATGCAGCGGGGTATAAT
GAGTATAGAAACTACTTGTTCTAGGTGTGGTGGAAGTGGGAAAATTGTGAAGAATTTTTG
CAAGACATGCAAGGGTGAACAGCTAGTGAAGGGGAAAAAATCAGTCAAGCTCGACATAAT
GGCTGGCATCGATGACAATGACACTATGAAGGTTTTTGGCAAGGGTGGTGCAGATGTTGA
GCGCAATAAACCTGGTGATCTCTATGTTACTATCAAGATCAGAGAGGATCCTGTCTTCCG
TAGAGAAGGCAACCATGTGCATGTTGACGCTATTATAAGCATTGCCCAGGCTGTACTAGG
TGGAACTGTCACAGTACCAACCCTTACGGGCAACGTTTCAGTCAAGGTTCGCCAAGGTAC
CCAACCAGGAGAAAAGGTTGTCCTCAGGGGCAAAGGAATAAAAGCACGGAATTCCCCAGC
CTATGGGAATCAGTATATTCACTTCAACGTCCGAGTTCCAACGGATGTGACACAACGACA
ACGCGAGTTAATGGAGGAATTTGATAAAGAGGAGTGCAACGAAGGGGAGAGAGTTGCAGC
TGCCTCCGGATGAAATTTTGCCGCACCCATTCGTTGGTTATTATACGTAATAAGCCGATA
GCCGAAGCCCCAATTATAATGGGCTCGGTATGACGTACATGATGTAGTCTTTAGAGTGCA
GATTTTGCATTGTATAATATGCACGCTAAGGCTAAATAACTGTACTAACCTTTTGACCTT
TTATTTATTGTTATGGCAAATGTAACAGCTAATATAACTAGGAACATATAATAGGAAGGC
TATGTGATGTGTAATGCCTTAGCTGCCGCATAAACTCACG