Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0168000-02
CDS Infomation

cds chromosome:IRGSP-1.0:12:3432106:3437195:1 gene:Os12g0168000 gene_biotype:protein_coding transcript_biotype:protein_coding description:5-formyltetrahydrofolate cyclo-ligase family protein. (Os12t0168000-01);Similar to 5-formyltetrahydrofolate cyclo-ligase. (Os12t0168000-02)
Sequence

ATGGCGTCCGCGGCGGCGGTGGCGGGGGCGGAGGCGGCGGACCCCAAGGCGTGGAAGTGG
GCGATACGGAAGCGGGTGTGGGACGCGCTGGAGGCGGAGGGCGTCGCGCGCGACCCGCGC
CCCGTCCACCACCGCATCCCCAACTTCGATGGCGCCGCAGCCGCCGCGGACTCGCTGGGG
AGACTCGACGTGTTCCAGGATGCACAATGTGTGAAGGTCAATCCCGACTCACCTCAGAAG
CAAGTTCGCTTCTTAACACTCTCAGGAGATAAAAAGTTGCTGACTCCGCAACCTCGGCTA
AGGACAGGATTTTTCTCAGTTCTGGAATCTCACATGATACCCATTGGATGTATTCCAGAA
GCATGTACTTCTGTTGGTGCAGCCAAATACGGGAGACCTATAGGTCTAGATGAAAAAATT
AAAGTGGATTTGATTGTGATTGGATCGGTTGCAGTTGATCCAAGCACAGGAGCACGACTA
GGAAAGGGCGAGGGATTTGCAGAGCTGGAATATGGGATGCTGCGTTATATGGGATCTATA
AGCGATTCAACCATGATAGTAACAACTGTGCATGACAAACAATTAGTGAATGACATTCCA
GTTGAGAAGCTGTTAGTTCATGATGTACCAGTTGACATTATCTGCACTCCAACTCAGGTC
ATATTCACAAATACCACGATCGCGAAACCACAAGGGATTTACTGGGAAAAGTTATCTCCA
GAGAAATTGGGCCAAATCCGAATTCTACAGGAGCTGAAGAGACGCATAGAGAGTGAAACA
GGAACTACACTTCCTTGTGGCCCTTCTGAGAAGCTACCACCAACAGCGCAGCGAAGAAGA
AGAAAACGAAGACGGTGA

Peptide Sequence

PEP ID

Os12t0168000-02
PEP Infomation

pep chromosome:IRGSP-1.0:12:3432106:3437195:1 gene:Os12g0168000 transcript:Os12t0168000-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:5-formyltetrahydrofolate cyclo-ligase family protein. (Os12t0168000-01);Similar to 5-formyltetrahydrofolate cyclo-ligase. (Os12t0168000-02)
Sequence

MASAAAVAGAEAADPKAWKWAIRKRVWDALEAEGVARDPRPVHHRIPNFDGAAAAADSLG
RLDVFQDAQCVKVNPDSPQKQVRFLTLSGDKKLLTPQPRLRTGFFSVLESHMIPIGCIPE
ACTSVGAAKYGRPIGLDEKIKVDLIVIGSVAVDPSTGARLGKGEGFAELEYGMLRYMGSI
SDSTMIVTTVHDKQLVNDIPVEKLLVHDVPVDIICTPTQVIFTNTTIAKPQGIYWEKLSP
EKLGQIRILQELKRRIESETGTTLPCGPSEKLPPTAQRRRRKRRR

Transcript Sequence

Transcript ID

Os12t0168000-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:3432106:3437195:1 gene:Os12g0168000 gene_biotype:protein_coding transcript_biotype:protein_coding description:5-formyltetrahydrofolate cyclo-ligase family protein. (Os12t0168000-01);Similar to 5-formyltetrahydrofolate cyclo-ligase. (Os12t0168000-02)
Sequence

GGGGTTCGAGGCCGAGCGGCTCCGCCTCGACGCAGAGGCGCGGGCCGGGATGGCGTCCGC
GGCGGCGGTGGCGGGGGCGGAGGCGGCGGACCCCAAGGCGTGGAAGTGGGCGATACGGAA
GCGGGTGTGGGACGCGCTGGAGGCGGAGGGCGTCGCGCGCGACCCGCGCCCCGTCCACCA
CCGCATCCCCAACTTCGATGGCGCCGCAGCCGCCGCGGACTCGCTGGGGAGACTCGACGT
GTTCCAGGATGCACAATGTGTGAAGGTCAATCCCGACTCACCTCAGAAGCAAGTTCGCTT
CTTAACACTCTCAGGAGATAAAAAGTTGCTGACTCCGCAACCTCGGCTAAGGACAGGATT
TTTCTCAGTTCTGGAATCTCACATGATACCCATTGGATGTATTCCAGAAGCATGTACTTC
TGTTGGTGCAGCCAAATACGGGAGACCTATAGGTCTAGATGAAAAAATTAAAGTGGATTT
GATTGTGATTGGATCGGTTGCAGTTGATCCAAGCACAGGAGCACGACTAGGAAAGGGCGA
GGGATTTGCAGAGCTGGAATATGGGATGCTGCGTTATATGGGATCTATAAGCGATTCAAC
CATGATAGTAACAACTGTGCATGACAAACAATTAGTGAATGACATTCCAGTTGAGAAGCT
GTTAGTTCATGATGTACCAGTTGACATTATCTGCACTCCAACTCAGGTCATATTCACAAA
TACCACGATCGCGAAACCACAAGGGATTTACTGGGAAAAGTTATCTCCAGAGAAATTGGG
CCAAATCCGAATTCTACAGGAGCTGAAGAGACGCATAGAGAGTGAAACAGGAACTACACT
TCCTTGTGGCCCTTCTGAGAAGCTACCACCAACAGCGCAGCGAAGAAGAAGAAAACGAAG
ACGGTGATGATTGAGTGTGTACGCATGCCCTGGTGCTGACGTGGACGAATGCACACGGTG
CGATATCGCGATTGGCTCTTGTGTCGTGGCGGGAGGCGTAACGAATTTGCCGAAGTACAC
TCGGTTTTCGTACGGAAGAAAAGGGAAGAGAACAAAATGACATGCGAGTAAGAGTACCTA
GCTACTAGTGGCTCTATCATAAAAAACAAAATATTACGAATTTTTGTCAACTGGAGCGGT
CGACAGATTTTTGTAATTTTTCATTATTTCTTTGATGTCGATACTAATTTCCTCGTTGCT
GTTTCTTTTCTTTTTCCTTTTCTTTTTTGAAGACTCCTTGTTACACAACACTGATAACAA
CAAACGAGTCGTACAGTCTTGGGTAATAGCCAATTTTAGAGCTTATATGAATACATGATT
CTCAAATAATACGAGTC