Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0163700-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:3231528:3234554:-1 gene:Os12g0163700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Actin 7 (Actin 2). (Os12t0163700-01)
Sequence

ATGGCTGACGGCGAGGACATCCAGCCCCTTGTCTGCGACAATGGCACCGGCATGGTCAAG
GCCGGGTTCGCGGGCGACGACGCGCCGCGGGCGGTGTTCCCGAGCATCGTGGGTCGCCCC
CGGCACACGGGGGTGATGGTGGGGATGGGGCAGAAGGACGCATACGTCGGGGACGAGGCG
CAGTCGAAGCGGGGGATCCTGACGCTCAAGTACCCGATCGAGCACGGGATCGTGAGCAAC
TGGGACGACATGGAGAAGATCTGGCACCACACCTTCTACAACGAGCTCCGGGTGGCGCCC
GAGGAGAAGATGACCCAGATCATGTTCGAGAGCTTCAATGTCCCCGCCATGTATGTCGCC
ATCCAGGCCGTGCTCTCCCTCTACGCCAGTGGCCGCACCACAGGCATCGTGCTGGACTCC
GGCGACGGTGTGAGCCACACCGTGCCGATCTACGAAGGCTACGCCCTCCCGCACGCCATC
CTCCGCCTCGACCTCGCCGGCCGCGACCTCACCGACGCCCTGATGAAGATCCTCACCGAG
CGAGGCTACTCCTTCACCACCACCGCCGAGCGGGAGATCGTCAGGGACATCAAGGAGAAG
CTCGCCTACGTCGCCCTCGACTACGAACAGGAGCTCAACGCCGCCGCCGCCGCCAAGAAC
AGCAGCTCGGTCGAGAAGAGCTACGAACTGCCCGATGGCCAGGTGATCACCATCGGGGCC
GAGAGGTTCAGGTGCCCCGAGGTGCTGTTCCAACCGTCGCTCGTCGGCATGGAGGCGGCC
GGGATCCACGAGACGACCTACAACTCGATCATGAAGTGCGATGTGGATATCAGGAAGGAT
CTGTACGGCAATGTCGTGCTGAGTGGTGGATCGACCATGTTCCCCGGGATCGCGGACCGG
ATGAGCAAGGAGATCACCGCGCTGGCGCCGAGCAGCATGAAGATCAAGGTGGTGGCGCCT
CCGGAGAGGAAGTACAGTGTCTGGATTGGTGGATCCATCCTTGCCTCCCTTAGCACCTTC
CAACAGATGTGGATCTCCAAGGCTGAATATGACGAATCAGGCCCAGCGATTGTCCACCGG
AAGTGCTTCTAA

Peptide Sequence

PEP ID

Os12t0163700-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:3231528:3234554:-1 gene:Os12g0163700 transcript:Os12t0163700-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Actin 7 (Actin 2). (Os12t0163700-01)
Sequence

MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEKMTQIMFESFNVPAMYVA
IQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTE
RGYSFTTTAEREIVRDIKEKLAYVALDYEQELNAAAAAKNSSSVEKSYELPDGQVITIGA
ERFRCPEVLFQPSLVGMEAAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGSTMFPGIADR
MSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDESGPAIVHR
KCF

Transcript Sequence

Transcript ID

Os12t0163700-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:3231528:3234554:-1 gene:Os12g0163700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Actin 7 (Actin 2). (Os12t0163700-01)
Sequence

AAGCTCTCCTGCCTAGTTCTTCTGCACCTCCTCCATCTCCATCTCGGTGGAGGTTTCAGG
CAGGCAATCTCCCGATATATAATCTCTGAAGAATCAAATGGCTGACGGCGAGGACATCCA
GCCCCTTGTCTGCGACAATGGCACCGGCATGGTCAAGGCCGGGTTCGCGGGCGACGACGC
GCCGCGGGCGGTGTTCCCGAGCATCGTGGGTCGCCCCCGGCACACGGGGGTGATGGTGGG
GATGGGGCAGAAGGACGCATACGTCGGGGACGAGGCGCAGTCGAAGCGGGGGATCCTGAC
GCTCAAGTACCCGATCGAGCACGGGATCGTGAGCAACTGGGACGACATGGAGAAGATCTG
GCACCACACCTTCTACAACGAGCTCCGGGTGGCGCCCGAGGAGAAGATGACCCAGATCAT
GTTCGAGAGCTTCAATGTCCCCGCCATGTATGTCGCCATCCAGGCCGTGCTCTCCCTCTA
CGCCAGTGGCCGCACCACAGGCATCGTGCTGGACTCCGGCGACGGTGTGAGCCACACCGT
GCCGATCTACGAAGGCTACGCCCTCCCGCACGCCATCCTCCGCCTCGACCTCGCCGGCCG
CGACCTCACCGACGCCCTGATGAAGATCCTCACCGAGCGAGGCTACTCCTTCACCACCAC
CGCCGAGCGGGAGATCGTCAGGGACATCAAGGAGAAGCTCGCCTACGTCGCCCTCGACTA
CGAACAGGAGCTCAACGCCGCCGCCGCCGCCAAGAACAGCAGCTCGGTCGAGAAGAGCTA
CGAACTGCCCGATGGCCAGGTGATCACCATCGGGGCCGAGAGGTTCAGGTGCCCCGAGGT
GCTGTTCCAACCGTCGCTCGTCGGCATGGAGGCGGCCGGGATCCACGAGACGACCTACAA
CTCGATCATGAAGTGCGATGTGGATATCAGGAAGGATCTGTACGGCAATGTCGTGCTGAG
TGGTGGATCGACCATGTTCCCCGGGATCGCGGACCGGATGAGCAAGGAGATCACCGCGCT
GGCGCCGAGCAGCATGAAGATCAAGGTGGTGGCGCCTCCGGAGAGGAAGTACAGTGTCTG
GATTGGTGGATCCATCCTTGCCTCCCTTAGCACCTTCCAACAGATGTGGATCTCCAAGGC
TGAATATGACGAATCAGGCCCAGCGATTGTCCACCGGAAGTGCTTCTAAGTTCTTGGTCT
TATTTATTCTCAAGTTCTTGCCGGGTTTCCAATGAGATATATTGTTGAGTTTGTCTGTTT
GAGCAGTGCTGAATCATACATGGCCATATTAGAGTTCCTGTTGATGCCAGGTTTGTTGCT
AGTATTGAGGAATTTGAACTATCCACCACTATCTTTTGTAATAGTAATTGCGTCACCTGA
GCCACATTATCATTCTTCTGTATATTCATAATTCATCTGCGTGAGTTGTAATTTACTGCA
TATATATAGAACATTTGTTTCATG