Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0163600-01
CDS Infomation	cds chromosome:IRGSP-1.0:12:3226519:3229144:-1 gene:Os12g0163600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os12t0163600-01)
Sequence	ATGACGGCGACATCCAACGCCGCCGCCGGCGCGGCCACGCTGATGCCGCTGCTGATCCAC CTCCTTCGCGGCGCCTCCGACCTCGCCTCCGTGTCCGCCACCCACGCCAAGCTCCTCAAG CTCGGGGCGGCCTCCTCGGTCGCCTCCTCCAACCACCTCCTCGCGGCGTACGGCCGCTGC GGCTGCACCGCCCTCGCGCGCCACCTGTTCGACGGAATGCGCGACCGGAACGTCGTCTCC TGGACGGCCCTCATGTCCGGGTACGCCAGCGCCGGCCGGCCCCGGGCGGCCGTCGCCCTC CTCCGCGCCATGGCACGCAGCGGCGTGCCACCCAACGCCTTCACCTTCTCTACAGCTGCC AGCTCGTGCGCGCGCCTGGCTGACGCCGGCCTTGGGCGGCAGGTGCATGCCCGCGCTGAG GTCGCGGGGTACGCGTGCGACAGCGTCGTTTCCACTGCGCTCGTCGACATGTACGGCAAG GCCGGCAGGGTCGGGGACGCCCGCGCTGTGTTCGACGCAATGCCCGTGACGGCGAGAAAC GCGGTTTCCTGGGCCTCGATGCTGTCGGTGTATGCGCAGAACGCGCTCGGGCATGACGCT ATCCAGCTCTTCGCCGAGCTCAGAACCAATGGCGAAGACATGGCGCCCAACCACTTCATG CTGTCAAGCGTGGTGAACGCGTGCGCGGGCGTCGGGCGGCTTGGCATCGGCAAGTGCATT CACGGCATGGTCCTCCACCATGGGCACGAAGACAATGACGTGGTTGCAGTGGCTCTGGTT GACATGTACTCCAAATGTGGCATCTACGAGTACTCAAAGAAGGTGTTCGACAGGATCAAC CAGCCGTCGGTCATCCCCTACACCTCCATCATCGTGGCGACGGCGAAGTACGGCCTCGGC AGGTGCGCACTCGCTTTGTTCAGTGACATGGTTGGCCGAGGCGTGCAGCCAAACAGTGTC ACACTGCTCGGCGTCCTGCACGCTTGCAGCCACTCAGGTCTGGTCGACACCGGCCTCCAG CTCCTCCGTTCAATGCGAAGCGAGTACGGCATTGATCCATGTGCCAGCCACTACACTTGT GCTGTCGACATGCTCGGTCGTGCAGGTCAGCTCGAGGCGGCATTCGAGCTGGCCGACGAA GCACAGGTCAATGGCAATGACGCCCTCATGCTGTGGAGCTCATTGCTGTCAGCTTGCCGG AACCACAAGCGCCTGGACCTAGCAACCATGGCTGGGCAGAAGGTATCAGAGTTCACCCAA GATGTGGCCGGCGCACTGGTGGTCATGTCGAACGCATACGCTTCAGCCGGTCAAGCCGAC GACGCTGCTGCGGTGTGGTCGAACATGAGGCGGCGCGGCATTCGGAAGGATCCCGGGTGC AGCTGGATCGAGATAAAGGACATCTCCTACGTGTTCTACGCTGGCATGGTATCGCCTGCC GGCTCAAGGGCCGGTGAGGTGATGCTGCTGTTAGATGAATTGGAGGGCAAGATGAGGGAG AAGGGTTACAAGGGGAGAATTGGCAGTGCCAGAGTCCTTGATGCTGATGAAGAAGAGGAT GGAAATCATCATCATCAGGAAGGCAGAGGTGTGATGGTTGGAGTGCACAGTGAGTTGCTG GCATTGGGGCTTGGATTGCTGGTGATCCCCAAGGGGATGGCCATTAGGGTGATGAAGAAC CTGAGGATGTGCCGTGACTGCCATGAAGCGTTTAAGGTCATCAGTGCCATTGTGGAGAGG GAGTTCGTTGTCAGGGATCTCAACAGGTTCCACCACTTCAGGATGGGGTCATGTTCTTGC AATGACTACTGGTGA

Peptide Sequence

PEP ID	Os12t0163600-01
PEP Infomation	pep chromosome:IRGSP-1.0:12:3226519:3229144:-1 gene:Os12g0163600 transcript:Os12t0163600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os12t0163600-01)
Sequence	MTATSNAAAGAATLMPLLIHLLRGASDLASVSATHAKLLKLGAASSVASSNHLLAAYGRC GCTALARHLFDGMRDRNVVSWTALMSGYASAGRPRAAVALLRAMARSGVPPNAFTFSTAA SSCARLADAGLGRQVHARAEVAGYACDSVVSTALVDMYGKAGRVGDARAVFDAMPVTARN AVSWASMLSVYAQNALGHDAIQLFAELRTNGEDMAPNHFMLSSVVNACAGVGRLGIGKCI HGMVLHHGHEDNDVVAVALVDMYSKCGIYEYSKKVFDRINQPSVIPYTSIIVATAKYGLG RCALALFSDMVGRGVQPNSVTLLGVLHACSHSGLVDTGLQLLRSMRSEYGIDPCASHYTC AVDMLGRAGQLEAAFELADEAQVNGNDALMLWSSLLSACRNHKRLDLATMAGQKVSEFTQ DVAGALVVMSNAYASAGQADDAAAVWSNMRRRGIRKDPGCSWIEIKDISYVFYAGMVSPA GSRAGEVMLLLDELEGKMREKGYKGRIGSARVLDADEEEDGNHHHQEGRGVMVGVHSELL ALGLGLLVIPKGMAIRVMKNLRMCRDCHEAFKVISAIVEREFVVRDLNRFHHFRMGSCSC NDYW

Transcript Sequence

Transcript ID	Os12t0163600-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:3226519:3229144:-1 gene:Os12g0163600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os12t0163600-01)
Sequence	GAAATGAAACGATCTGGTTGCCTTCTCCGGTTCTCCCCAAGCAAACACGGACTAGGGCCT GCGCCGCGGCGGCGGCGGCGGCGGCGCTGCTTTTCCCCGGCGCGCCCCGTCCCCGGCAGC GGCTCCTCCGGCGTGGTACCTCCCAAGCGCTTCCGATCCTCGACATGACACTGGCACCAA CCGGTCTCCATGACGGCGACATCCAACGCCGCCGCCGGCGCGGCCACGCTGATGCCGCTG CTGATCCACCTCCTTCGCGGCGCCTCCGACCTCGCCTCCGTGTCCGCCACCCACGCCAAG CTCCTCAAGCTCGGGGCGGCCTCCTCGGTCGCCTCCTCCAACCACCTCCTCGCGGCGTAC GGCCGCTGCGGCTGCACCGCCCTCGCGCGCCACCTGTTCGACGGAATGCGCGACCGGAAC GTCGTCTCCTGGACGGCCCTCATGTCCGGGTACGCCAGCGCCGGCCGGCCCCGGGCGGCC GTCGCCCTCCTCCGCGCCATGGCACGCAGCGGCGTGCCACCCAACGCCTTCACCTTCTCT ACAGCTGCCAGCTCGTGCGCGCGCCTGGCTGACGCCGGCCTTGGGCGGCAGGTGCATGCC CGCGCTGAGGTCGCGGGGTACGCGTGCGACAGCGTCGTTTCCACTGCGCTCGTCGACATG TACGGCAAGGCCGGCAGGGTCGGGGACGCCCGCGCTGTGTTCGACGCAATGCCCGTGACG GCGAGAAACGCGGTTTCCTGGGCCTCGATGCTGTCGGTGTATGCGCAGAACGCGCTCGGG CATGACGCTATCCAGCTCTTCGCCGAGCTCAGAACCAATGGCGAAGACATGGCGCCCAAC CACTTCATGCTGTCAAGCGTGGTGAACGCGTGCGCGGGCGTCGGGCGGCTTGGCATCGGC AAGTGCATTCACGGCATGGTCCTCCACCATGGGCACGAAGACAATGACGTGGTTGCAGTG GCTCTGGTTGACATGTACTCCAAATGTGGCATCTACGAGTACTCAAAGAAGGTGTTCGAC AGGATCAACCAGCCGTCGGTCATCCCCTACACCTCCATCATCGTGGCGACGGCGAAGTAC GGCCTCGGCAGGTGCGCACTCGCTTTGTTCAGTGACATGGTTGGCCGAGGCGTGCAGCCA AACAGTGTCACACTGCTCGGCGTCCTGCACGCTTGCAGCCACTCAGGTCTGGTCGACACC GGCCTCCAGCTCCTCCGTTCAATGCGAAGCGAGTACGGCATTGATCCATGTGCCAGCCAC TACACTTGTGCTGTCGACATGCTCGGTCGTGCAGGTCAGCTCGAGGCGGCATTCGAGCTG GCCGACGAAGCACAGGTCAATGGCAATGACGCCCTCATGCTGTGGAGCTCATTGCTGTCA GCTTGCCGGAACCACAAGCGCCTGGACCTAGCAACCATGGCTGGGCAGAAGGTATCAGAG TTCACCCAAGATGTGGCCGGCGCACTGGTGGTCATGTCGAACGCATACGCTTCAGCCGGT CAAGCCGACGACGCTGCTGCGGTGTGGTCGAACATGAGGCGGCGCGGCATTCGGAAGGAT CCCGGGTGCAGCTGGATCGAGATAAAGGACATCTCCTACGTGTTCTACGCTGGCATGGTA TCGCCTGCCGGCTCAAGGGCCGGTGAGGTGATGCTGCTGTTAGATGAATTGGAGGGCAAG ATGAGGGAGAAGGGTTACAAGGGGAGAATTGGCAGTGCCAGAGTCCTTGATGCTGATGAA GAAGAGGATGGAAATCATCATCATCAGGAAGGCAGAGGTGTGATGGTTGGAGTGCACAGT GAGTTGCTGGCATTGGGGCTTGGATTGCTGGTGATCCCCAAGGGGATGGCCATTAGGGTG ATGAAGAACCTGAGGATGTGCCGTGACTGCCATGAAGCGTTTAAGGTCATCAGTGCCATT GTGGAGAGGGAGTTCGTTGTCAGGGATCTCAACAGGTTCCACCACTTCAGGATGGGGTCA TGTTCTTGCAATGACTACTGGTGATTCAATCAAAGGCTAGAATCAGTTACTCCCATCTTG CAATGATTACTGGTGATTCAATCAAAGGCTAGAATCAGTTACTCCCACAGTCCTAAAATA TAAGAACCTAAAACCGGATGTGACATTTCCTAGTATAATGAATCTTAAGAGGCACTAAAA AATGTCTCATTCAATTCTAGGTTCTTCTATTTTGGGACGGATGGAGTAGTAGGAAGAAAC CAGGTCATGTTCTTGCAATGACTACTGGTGATGCAATCAAAGGCTAAATCGGTTGGTAGT TGTGATCTTTTTGACATAAAAGGAAGACAGCCTTGACAGAATTTCTTTGTGTAGATGCAG AACTGAAGTGACTTCTTTCGTTGCGAGCCTGTAGGTAGGTACCAAAGGTCCACAGCATTG CTTGAAAATATAGACACAAACGAACATGGCCTGGGGTTGGAGTTGGCCCCAACTTTGTTG AAACTGGGTTTGTTTTATGATATGTCTTTGTGCTCTAGTAATAAATATTTGATATTTATG ATAAAGTTTGATCAAACTCTTAAATTTTGATTATCAATAATTTCTCAAGTGATAGTTTTT AATAACATGTACATAGAGTACTATCATAAATATCATAAACTTATTT