Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0160400-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:3024060:3029390:1 gene:Os12g0160400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:basic helix-loop-helix protein 150 description:Basic helix-loop-helix dimerisation region bHLH domain containing protein. (Os12t0160400-01)
Sequence

ATGGCCGTCGGTGATGCGCTGCGGCGGCTGTGCGAGGAGGCCCGGTGGTCGTACGCCGTC
TTCTGGAAGGCCATCGGCGCCGCCGACCCCGTGCATTTGGTGTGGGAGGATGGCTTCTGC
GGCCACGCATCGTGCTCTGCTGGATCTGAGGCTTCTGAGGCTGGGTGCGAGTCCGGCGGC
GCCGTCTGCACGCTTGTTAGGAAGATCATGGCCTCGCAGGTTCATGTTGTTGGAGAAGGT
ACCATTGGCCGTGCTGCATTCACTGGGAATCATCAATGGATTGTCCATGAAACTGCCAAT
GATCACGGGCTCAGATCCGAGGTTGCTGCTGAGATGAACAATCAGTTCAGAGCTGGCATT
AAGACCATTGCAATTATACCTGTGTTACCACGTGGTGTGCTGCAGCTAGGCTCTACTAGT
GTGATTCTGGAAAACATAAGCTCTGTGCAACAATATAAGAAGCTGTGCTGTCAGCTAAAC
AACCGGTCGAGTATGGTCGCATCTGCTTCAGCCAAAAATGATTTGAGCCAGAAAGTTCAG
TCACGATCTTTACATGGTCTCCCAAGTATACACCCTTATGAACAGTGCTATGGTCATGAT
GCCCGAGCCTTGTCAAGTAGCACATCAGCAAACACGGGCAGGAACACTTCCTTACTTAAG
GTTGCACAGAGAAATGATCAAGCCATTAGAGAGCAAGTCTTATATGCTCCTGATATGAGG
TTCAGACAGCAGCTCCCTTATAGTGACAGGAGAGTTGATATTAACACACACAGTAGTGCT
ATGAGCTCAGGTTTTATCTCGTCTATCTCAGCATCAGTGGAAAAGTATCCATTGTTGACG
AACAACATTGGACAAGTAGAACACGGGAACATGGAAGAGTCATCAGGGCCCAGAAATGTT
CTGTTAAAATCCCTTTCATGCCGGAACCCTGTTGTCCATGAAAATACTAACACGAGTCTA
TTTCATGGAGGGGATGAGGTGCCGGCTTTTCTGAATAGTCATGGGAGTTTTGATTTTCTC
CAAGCAGGTCCTAGAGTAGTTGAGGCTAACTTGTATAACAATGGTACGTCTAGTCAAGTT
TTAGACCAAAGATGCAGTTCCACTTCTGGGATGGCAGGGTATAAACCATCTGTTTCATAT
AAATTCCCCCACTCTGCTCAATTCATTGTGAAAATGGAGAATCCCAGAAGACAATCATTT
CAAGACCCCGCAGCTCCATCCTCTGGTTCTGATGTCCAAGTTTCGAGTGGTTTGAAAACA
ACCACTCGTCAGTTTAACCCAGAGCATATGTGCCAAAACAAGAAGACAAATGAAGTCAAT
GACTCCAGTGCTGCTGTAAGCACGCAGGATGTGAAAAATATGGACCGACACAAGATCCTA
GACATTTCTAATGAGAGAACCTCCTCATTTGTTATGGATCCTAGTACAGAAAATGATTTG
TTTGATATATTTGGTACTGATTTTCATCAATTGCACCGCAGTTTGGATGGTGACCTCTCC
TGGAACACTGCAAAGCCTCAGAGTTCAGACAGAGATGCACCTGAATCCTCAATTTATCTT
GACAGTTCACCAGCCTTCGGTGCACAGGAGGATGAATTTTCTTATTCTGGGATTTTTTCG
CTCACTGATACTGACCAACTATTGGATGCGGTTATCTCGAATGTTAATCCTGGTGGCAAG
CAGATCTCTGGTGACAGTGCCTCGTGCAAGACTTCGTTGACAGACATTCCTAGCACTTCT
TACTGTGGCTCAAAAGAAACGAAGCAATGCAAGTCATCTGGTGCTCCACCTTTGCTAATC
AAGAATGAGTTGGCAGTTTCAAATTTTGTCAAACAACCATGTTTCCTAGAAAAGGCTGAA
GATGGTTGTCTTTCCCAAAACAATGGAGTGCAGAAATCTCAGATACGCCTCTGGATTGAG
AGTGGACAGAACATGAAATGTGAAAGCGTGTCTGCCTCAAACAGCAAAGGTCTGGATACA
GCAAACAAGGCAAATCGGAAGAGATCTAGACCAGGAGAGAGTCCTAAGCCACGGCCAAAG
GACCGCCAGCTTATTCAAGATCGTATAAAGGAGCTGCGGGAACTAGTACCTAATGGGGCA
AAGTGTAGCATTGATGCATTATTGGAAAAGACCATTAAGCACATGGTTTTCTTGCAAAGT
GTGACGAAGCATGCAGACAACCTCAAGGATTCTAACGAATCAAAGATACATGGTGGTGGT
GAGAATGGCCCGCTTCTGAAAGATTACTTTGAAGGTGGTGCTACTTGGGCTTTTGATGTT
GGCAGTCAATCTATGACATGCCCAATCATTGTTGAAGATCTTGATCGGCCTCGTCAGATG
CTTGTGGAGATGCTCTGTGAGGATAGAGGGATCTTCTTGGAGATAGCTGACTTCATCAAA
GGACTTGGATTAACTATCTTGAGGGGTGTGATGGAAGCACGCAAAAATAAAATCTGGGCT
CGCTTCACCGTTGAGGCCAACAGGGATGTGACTAGAATGGAAATCTTCCTCTCGCTTATG
CGCTTGTTGGAACCGAGCTGTGATGGCGGCGGAGGAGGCGTGGGAGATAATCCTAACAAT
GTAAAAATACCTCCTGGGATTGTGCAACATCCGGTTATACCAGCAACAGGCCATCTTAGG
TGA

Peptide Sequence

PEP ID

Os12t0160400-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:3024060:3029390:1 gene:Os12g0160400 transcript:Os12t0160400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:basic helix-loop-helix protein 150 description:Basic helix-loop-helix dimerisation region bHLH domain containing protein. (Os12t0160400-01)
Sequence

MAVGDALRRLCEEARWSYAVFWKAIGAADPVHLVWEDGFCGHASCSAGSEASEAGCESGG
AVCTLVRKIMASQVHVVGEGTIGRAAFTGNHQWIVHETANDHGLRSEVAAEMNNQFRAGI
KTIAIIPVLPRGVLQLGSTSVILENISSVQQYKKLCCQLNNRSSMVASASAKNDLSQKVQ
SRSLHGLPSIHPYEQCYGHDARALSSSTSANTGRNTSLLKVAQRNDQAIREQVLYAPDMR
FRQQLPYSDRRVDINTHSSAMSSGFISSISASVEKYPLLTNNIGQVEHGNMEESSGPRNV
LLKSLSCRNPVVHENTNTSLFHGGDEVPAFLNSHGSFDFLQAGPRVVEANLYNNGTSSQV
LDQRCSSTSGMAGYKPSVSYKFPHSAQFIVKMENPRRQSFQDPAAPSSGSDVQVSSGLKT
TTRQFNPEHMCQNKKTNEVNDSSAAVSTQDVKNMDRHKILDISNERTSSFVMDPSTENDL
FDIFGTDFHQLHRSLDGDLSWNTAKPQSSDRDAPESSIYLDSSPAFGAQEDEFSYSGIFS
LTDTDQLLDAVISNVNPGGKQISGDSASCKTSLTDIPSTSYCGSKETKQCKSSGAPPLLI
KNELAVSNFVKQPCFLEKAEDGCLSQNNGVQKSQIRLWIESGQNMKCESVSASNSKGLDT
ANKANRKRSRPGESPKPRPKDRQLIQDRIKELRELVPNGAKCSIDALLEKTIKHMVFLQS
VTKHADNLKDSNESKIHGGGENGPLLKDYFEGGATWAFDVGSQSMTCPIIVEDLDRPRQM
LVEMLCEDRGIFLEIADFIKGLGLTILRGVMEARKNKIWARFTVEANRDVTRMEIFLSLM
RLLEPSCDGGGGGVGDNPNNVKIPPGIVQHPVIPATGHLR

Transcript Sequence

Transcript ID

Os12t0160400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:3024060:3029390:1 gene:Os12g0160400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:basic helix-loop-helix protein 150 description:Basic helix-loop-helix dimerisation region bHLH domain containing protein. (Os12t0160400-01)
Sequence

GGTTTGGTTTGGCTTGGCTTGGCGGCTGGTTCTGCTGAGGCTGACGTGGCGGCGGGTGGG
GCCCATCTCATGGCTGCTGCCTCTGTGGCGGCGAGGAGCGGCGGCGGCGGGGTTAGGATT
CCGGCGAGGAGGGGCGGCGGGCTCCGCGCGAAGCAGGCCGGGCGCGCCAGCTTCCGCGGC
GCCTAAGAGAGGAGGAGGAGAAAGAGAAAGCAGGGTTCTTTGCTGCTTTTGGTCTTCCCT
TTCTTTTCTTCTTCTTCTTCTTCTTTATTTACTCCTCCTGGGAGGAAGGGAGGGAGCTTA
GCTAGGGTTTCCGAGGAGGAGGATGGCCGTCGGTGATGCGCTGCGGCGGCTGTGCGAGGA
GGCCCGGTGGTCGTACGCCGTCTTCTGGAAGGCCATCGGCGCCGCCGACCCCGTGCATTT
GGTGTGGGAGGATGGCTTCTGCGGCCACGCATCGTGCTCTGCTGGATCTGAGGCTTCTGA
GGCTGGGTGCGAGTCCGGCGGCGCCGTCTGCACGCTTGTTAGGAAGATCATGGCCTCGCA
GGTTCATGTTGTTGGAGAAGGTACCATTGGCCGTGCTGCATTCACTGGGAATCATCAATG
GATTGTCCATGAAACTGCCAATGATCACGGGCTCAGATCCGAGGTTGCTGCTGAGATGAA
CAATCAGTTCAGAGCTGGCATTAAGACCATTGCAATTATACCTGTGTTACCACGTGGTGT
GCTGCAGCTAGGCTCTACTAGTGTGATTCTGGAAAACATAAGCTCTGTGCAACAATATAA
GAAGCTGTGCTGTCAGCTAAACAACCGGTCGAGTATGGTCGCATCTGCTTCAGCCAAAAA
TGATTTGAGCCAGAAAGTTCAGTCACGATCTTTACATGGTCTCCCAAGTATACACCCTTA
TGAACAGTGCTATGGTCATGATGCCCGAGCCTTGTCAAGTAGCACATCAGCAAACACGGG
CAGGAACACTTCCTTACTTAAGGTTGCACAGAGAAATGATCAAGCCATTAGAGAGCAAGT
CTTATATGCTCCTGATATGAGGTTCAGACAGCAGCTCCCTTATAGTGACAGGAGAGTTGA
TATTAACACACACAGTAGTGCTATGAGCTCAGGTTTTATCTCGTCTATCTCAGCATCAGT
GGAAAAGTATCCATTGTTGACGAACAACATTGGACAAGTAGAACACGGGAACATGGAAGA
GTCATCAGGGCCCAGAAATGTTCTGTTAAAATCCCTTTCATGCCGGAACCCTGTTGTCCA
TGAAAATACTAACACGAGTCTATTTCATGGAGGGGATGAGGTGCCGGCTTTTCTGAATAG
TCATGGGAGTTTTGATTTTCTCCAAGCAGGTCCTAGAGTAGTTGAGGCTAACTTGTATAA
CAATGGTACGTCTAGTCAAGTTTTAGACCAAAGATGCAGTTCCACTTCTGGGATGGCAGG
GTATAAACCATCTGTTTCATATAAATTCCCCCACTCTGCTCAATTCATTGTGAAAATGGA
GAATCCCAGAAGACAATCATTTCAAGACCCCGCAGCTCCATCCTCTGGTTCTGATGTCCA
AGTTTCGAGTGGTTTGAAAACAACCACTCGTCAGTTTAACCCAGAGCATATGTGCCAAAA
CAAGAAGACAAATGAAGTCAATGACTCCAGTGCTGCTGTAAGCACGCAGGATGTGAAAAA
TATGGACCGACACAAGATCCTAGACATTTCTAATGAGAGAACCTCCTCATTTGTTATGGA
TCCTAGTACAGAAAATGATTTGTTTGATATATTTGGTACTGATTTTCATCAATTGCACCG
CAGTTTGGATGGTGACCTCTCCTGGAACACTGCAAAGCCTCAGAGTTCAGACAGAGATGC
ACCTGAATCCTCAATTTATCTTGACAGTTCACCAGCCTTCGGTGCACAGGAGGATGAATT
TTCTTATTCTGGGATTTTTTCGCTCACTGATACTGACCAACTATTGGATGCGGTTATCTC
GAATGTTAATCCTGGTGGCAAGCAGATCTCTGGTGACAGTGCCTCGTGCAAGACTTCGTT
GACAGACATTCCTAGCACTTCTTACTGTGGCTCAAAAGAAACGAAGCAATGCAAGTCATC
TGGTGCTCCACCTTTGCTAATCAAGAATGAGTTGGCAGTTTCAAATTTTGTCAAACAACC
ATGTTTCCTAGAAAAGGCTGAAGATGGTTGTCTTTCCCAAAACAATGGAGTGCAGAAATC
TCAGATACGCCTCTGGATTGAGAGTGGACAGAACATGAAATGTGAAAGCGTGTCTGCCTC
AAACAGCAAAGGTCTGGATACAGCAAACAAGGCAAATCGGAAGAGATCTAGACCAGGAGA
GAGTCCTAAGCCACGGCCAAAGGACCGCCAGCTTATTCAAGATCGTATAAAGGAGCTGCG
GGAACTAGTACCTAATGGGGCAAAGTGTAGCATTGATGCATTATTGGAAAAGACCATTAA
GCACATGGTTTTCTTGCAAAGTGTGACGAAGCATGCAGACAACCTCAAGGATTCTAACGA
ATCAAAGATACATGGTGGTGGTGAGAATGGCCCGCTTCTGAAAGATTACTTTGAAGGTGG
TGCTACTTGGGCTTTTGATGTTGGCAGTCAATCTATGACATGCCCAATCATTGTTGAAGA
TCTTGATCGGCCTCGTCAGATGCTTGTGGAGATGCTCTGTGAGGATAGAGGGATCTTCTT
GGAGATAGCTGACTTCATCAAAGGACTTGGATTAACTATCTTGAGGGGTGTGATGGAAGC
ACGCAAAAATAAAATCTGGGCTCGCTTCACCGTTGAGGCCAACAGGGATGTGACTAGAAT
GGAAATCTTCCTCTCGCTTATGCGCTTGTTGGAACCGAGCTGTGATGGCGGCGGAGGAGG
CGTGGGAGATAATCCTAACAATGTAAAAATACCTCCTGGGATTGTGCAACATCCGGTTAT
ACCAGCAACAGGCCATCTTAGGTGAGAAAACGAGTAGGGGAAACATTATCAGAGGCATCT
GAATCTCTGAACTTCTGAAGTGCTAAGAGTGGGAGCTTCAGTTCACTCTCCTGCCATGAC
TAGCATTGTCAGTGTGCACTAAGAGCTGGATCCTTGTCGAAAATACAGTGCTCTTCCTGT
TCAGTAGGCAACACACCCGTAGAAAGAAAAGCCTGACGGTAGATGATGATGCATCGAGAC
ATGGACAATCAGTCAGAATGATCCTTGGGCCATGTTTTGCTTGTATAATCTTGTTTCAGT
TTGCTACTGATGTGTTTGTTGGCGTTATTAGTGAATTTTGTCTTGTTGATGATCTACTGA
ATGC