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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0159600-02
CDS Infomation

cds chromosome:IRGSP-1.0:12:2979707:2980740:-1 gene:Os12g0159600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Harpin-induced 1 domain containing protein. (Os12t0159600-01);Harpin-induced 1 domain containing protein. (Os12t0159600-02)
Sequence

ATGGGGAAGGATTGCGGCAAGCACGGCGACGACGACTTCCGGCAGGGATGCCGGCGATTC
ATCACCGTCCTCGTCGTCCTCGCCATCCTCGTCGGCATCATCGCCCTCATCGTCTACCTC
GTCCTCCGCCCCACCCACCCTCGCTTCTACCTCCAGGACGCCACCCTCCGCCAGCTCGAC
CTCTCCAACTCCTCCTCCACCGCCGGCGGCGTCCTCTCCACCACCATCCAGGTCACCGTC
GCCTCCCGCAACCCCAACGACCGCGTCGGCGTCTACTACGACCGCCTCGACGTCTACGCC
TCCTACAAGTACCAGCAGATCACCGTCGCCGCCTCGCTCCCGCCGGTGTACCAGGGCCAC
GGCGACGTCGACGTCTGGTCGCCGGTGCTCGCCGGCCCCAGCGTCCCCTTCGCGCCCTAC
CTCGCCGACGCCATCTCGCAGGATTGCCAGGCGGGCTACCTCATCCTCCAGGTCAAGATC
GACGGCCGCGTCCGGTGGAAGGTCGGCAGCTGGATCTCCGGCCACTACCACCTCTTCGTC
ACCTGCCCGGCCTTCCTCGTCACCGCCGGCGGCAATGGCTCCCCCGGCGCCAGCGGCTTC
AGGTTCCAGACTACCACCTACTGCCACGTCGAGGTCTAG

Peptide Sequence

PEP ID

Os12t0159600-02
PEP Infomation

pep chromosome:IRGSP-1.0:12:2979707:2980740:-1 gene:Os12g0159600 transcript:Os12t0159600-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Harpin-induced 1 domain containing protein. (Os12t0159600-01);Harpin-induced 1 domain containing protein. (Os12t0159600-02)
Sequence

MGKDCGKHGDDDFRQGCRRFITVLVVLAILVGIIALIVYLVLRPTHPRFYLQDATLRQLD
LSNSSSTAGGVLSTTIQVTVASRNPNDRVGVYYDRLDVYASYKYQQITVAASLPPVYQGH
GDVDVWSPVLAGPSVPFAPYLADAISQDCQAGYLILQVKIDGRVRWKVGSWISGHYHLFV
TCPAFLVTAGGNGSPGASGFRFQTTTYCHVEV

Transcript Sequence

Transcript ID

Os12t0159600-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:2979707:2980740:-1 gene:Os12g0159600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Harpin-induced 1 domain containing protein. (Os12t0159600-01);Harpin-induced 1 domain containing protein. (Os12t0159600-02)
Sequence

GCAAAACCAAACCAAACCAAAGCAAAGACTAGTGTAGAGTAGAAGAGAAGAGTCCACCAA
GAAACCAAGAAGCTAGAAGCATCATGGGGAAGGATTGCGGCAAGCACGGCGACGACGACT
TCCGGCAGGGATGCCGGCGATTCATCACCGTCCTCGTCGTCCTCGCCATCCTCGTCGGCA
TCATCGCCCTCATCGTCTACCTCGTCCTCCGCCCCACCCACCCTCGCTTCTACCTCCAGG
ACGCCACCCTCCGCCAGCTCGACCTCTCCAACTCCTCCTCCACCGCCGGCGGCGTCCTCT
CCACCACCATCCAGGTCACCGTCGCCTCCCGCAACCCCAACGACCGCGTCGGCGTCTACT
ACGACCGCCTCGACGTCTACGCCTCCTACAAGTACCAGCAGATCACCGTCGCCGCCTCGC
TCCCGCCGGTGTACCAGGGCCACGGCGACGTCGACGTCTGGTCGCCGGTGCTCGCCGGCC
CCAGCGTCCCCTTCGCGCCCTACCTCGCCGACGCCATCTCGCAGGATTGCCAGGCGGGCT
ACCTCATCCTCCAGGTCAAGATCGACGGCCGCGTCCGGTGGAAGGTCGGCAGCTGGATCT
CCGGCCACTACCACCTCTTCGTCACCTGCCCGGCCTTCCTCGTCACCGCCGGCGGCAATG
GCTCCCCCGGCGCCAGCGGCTTCAGGTTCCAGACTACCACCTACTGCCACGTCGAGGTCT
AGCTAAGCTAGTTATGTTATGATCTACTACTGTGCCCACCGCCGCCGCCGGAATCTGCTA
TCTCCGGCTAGTCGCCGGCGAGGTAGGTTTGATTTCTTGGAGGTGGTGGTGTTCTTGTGC
GTCCATAGTGAAAAAGAGATGATGGTGGTAATAATGAATTATTATGTGGGTTACAAAATG
TAAAGGAGGTGGAGAGGCAATTTAAGTAGGATTAATGGTATGGTTAATTATAATGCTCTC
TTGATTATTAGCTTAATTGTTAATAATCCTTTTTTTGTCTTAATTAAGGAGAAATGCATG
TTTAGTTATTTGTC