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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0159000-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:2950701:2951591:-1 gene:Os12g0159000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Harpin-induced 1 domain containing protein. (Os12t0159000-01)
Sequence

ATGTCAAGCGGCGGCAACCAGGAGAGGACCTGCTGCGGCAGCCTGTTCACCTTCATCGTC
ACCGGCGGCTTCGTGGTGCTCATCTACTGGGCCATCTTCCAGCCCCACCACATCCGCGCC
ACCGTCGCCTCCGCCGACCTCACCAACCTCACCGTCGCCGGCGCCGCCGTCTCCTACAAG
CTCGCCGTCAGGCTCAACCTCTACAACCCCAGCCTCCGCGTCAACATCTACTACGACGAG
CTCGACTCCGAGCTCCGCTTCCGCGGCGAGCGCCTCGGCCACGCCACCGGCGCCACCCCG
GCCGAGTTCTACCAGCGGCGGAAGAGCTCCGACGACGTGACGTTTGAGTTCGCCGGGACA
GGCGTCGCCGTCGCCGGCGACGCCGCCGGCGAGCTGGGGAAGGAGAAGGGGAAGGGCAGC
GTGAGCCTGGAGGTGGCCGTCGACGGCAAGGTGAGGTACAGGTTCGGCAGCATCAAGATC
CGGCAGAAGCCGAGGATATGGTGCTCGCTCACCATCCCCGTCACGGCCGACGGCGGCGGC
CGCCTCGACTCCGGCGACCGGTGTAGCGTCAAGTACTAG

Peptide Sequence

PEP ID

Os12t0159000-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:2950701:2951591:-1 gene:Os12g0159000 transcript:Os12t0159000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Harpin-induced 1 domain containing protein. (Os12t0159000-01)
Sequence

MSSGGNQERTCCGSLFTFIVTGGFVVLIYWAIFQPHHIRATVASADLTNLTVAGAAVSYK
LAVRLNLYNPSLRVNIYYDELDSELRFRGERLGHATGATPAEFYQRRKSSDDVTFEFAGT
GVAVAGDAAGELGKEKGKGSVSLEVAVDGKVRYRFGSIKIRQKPRIWCSLTIPVTADGGG
RLDSGDRCSVKY

Transcript Sequence

Transcript ID

Os12t0159000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:2950701:2951591:-1 gene:Os12g0159000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Harpin-induced 1 domain containing protein. (Os12t0159000-01)
Sequence

ACCCTTCTCCCCTCTCCAACCCTTCGCCTCCGCGTCGAGCCGTTGACCAGCGACTCCGGC
GAGCAACCTCCTCCTCCGCCGCCGCCGCCGTTAGCTCCGCCATGTCAAGCGGCGGCAACC
AGGAGAGGACCTGCTGCGGCAGCCTGTTCACCTTCATCGTCACCGGCGGCTTCGTGGTGC
TCATCTACTGGGCCATCTTCCAGCCCCACCACATCCGCGCCACCGTCGCCTCCGCCGACC
TCACCAACCTCACCGTCGCCGGCGCCGCCGTCTCCTACAAGCTCGCCGTCAGGCTCAACC
TCTACAACCCCAGCCTCCGCGTCAACATCTACTACGACGAGCTCGACTCCGAGCTCCGCT
TCCGCGGCGAGCGCCTCGGCCACGCCACCGGCGCCACCCCGGCCGAGTTCTACCAGCGGC
GGAAGAGCTCCGACGACGTGACGTTTGAGTTCGCCGGGACAGGCGTCGCCGTCGCCGGCG
ACGCCGCCGGCGAGCTGGGGAAGGAGAAGGGGAAGGGCAGCGTGAGCCTGGAGGTGGCCG
TCGACGGCAAGGTGAGGTACAGGTTCGGCAGCATCAAGATCCGGCAGAAGCCGAGGATAT
GGTGCTCGCTCACCATCCCCGTCACGGCCGACGGCGGCGGCCGCCTCGACTCCGGCGACC
GGTGTAGCGTCAAGTACTAGAGGAGCTAGCTAGCTAGTGGGCAATGATTTGAGTGTATTA
AATTGTTTTTCTTTCTTTCAGATTTGTGAGCCACTTGTTGATTTGTTTCTGTGAAAATAC
ATTCATATTTTTGTATTTTTTTTGGGTGTAGGGTGTCAGTGATAATCGTTTGTTCCAACT
GTATTATGTGATACTACTATCCTTGAATTTCAATCTACAATTTTTTGAACG