Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0154400-00
CDS Infomation

cds chromosome:IRGSP-1.0:12:2678088:2681517:1 gene:Os12g0154400 gene_biotype:protein_coding transcript_biotype:protein_coding description:t-snare domain containing protein. (Os12t0154400-00)
Sequence

ATGTCGAGGGTTCGCGACAGGGCCGAGGACTTCAAGGAGTCCGTCCGCGTCGCCGCGCTC
GGCCATGGGTACACGGAGTCTCAGTTAGCCGCGCTCATGTCTTCTTTCATCATCCGGAAG
CCGCCCCCCAAATTACCCTTTACAAAGGCTGCAATCAAGACGCTTGAGAGTATCAGGGAA
CTGGAGAAGTTTATTGTGAAGCATAGGAAGGACTATGTTGACATGCATCGCACCACGGAG
CAAGAAAGGGACAACATTGAGCATGAGGTCAGTGTTTTTGTAAAAGCATGCAAGGAACAA
ATAGATATCCTAAAGAACAGGATCCATGAAGAAAAAGGTGGAAGTACAAAGACATGGCTT
GGTACAAGCGATGAGAGCTCCCGGTTGGATTTGATAGCTCACCAGCATGGTGTGGTTTTG
ATTTTGAGTGAGCGTCTTCACTCAGTAACTGCACAATTTGATCGTCTTCGGACCATGCGT
TTTCAAGATGCTATTAACAGAGCGATGCCAAGAAAACGGATTCAGAAGAAACGAGAAACC
AAAGCTGCTGAACCATCTAAGCCAAACCTTGTATTAAAATCTGATGTTTCAAAGGTTGAA
GATCAGGAGGTCTCTACTGCACCACTAAGAGTTCAAGAACAACTCTTGGATGATGAAACA
AGAGCTCTTCAGGTGGAGTTGACAAATCTTCTTGATGCTGTCCAAGAAACAGAGACAAAG
ATGATAGAGATGTCAGCACTTAATCATCTCATGTCAACACATGTTCTACAACAAGCTCAG
CAGATACAGTATTTATATGACCAGGCAGTTGAAGCTACAAACAATGTGGAGCGTGGGAAC
AAGGAGCTATCCCAGGCGATCCAGCGCAACAGCAGCAGTAGAACCTTCCTCCTGCTTTTC
TTCTTTGTTCTTACCTTTTCCGTCCTCTTTCTGGATTGGTACAGCAAATGA

Peptide Sequence

PEP ID

Os12t0154400-00
PEP Infomation

pep chromosome:IRGSP-1.0:12:2678088:2681517:1 gene:Os12g0154400 transcript:Os12t0154400-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:t-snare domain containing protein. (Os12t0154400-00)
Sequence

MSRVRDRAEDFKESVRVAALGHGYTESQLAALMSSFIIRKPPPKLPFTKAAIKTLESIRE
LEKFIVKHRKDYVDMHRTTEQERDNIEHEVSVFVKACKEQIDILKNRIHEEKGGSTKTWL
GTSDESSRLDLIAHQHGVVLILSERLHSVTAQFDRLRTMRFQDAINRAMPRKRIQKKRET
KAAEPSKPNLVLKSDVSKVEDQEVSTAPLRVQEQLLDDETRALQVELTNLLDAVQETETK
MIEMSALNHLMSTHVLQQAQQIQYLYDQAVEATNNVERGNKELSQAIQRNSSSRTFLLLF
FFVLTFSVLFLDWYSK

Transcript Sequence

Transcript ID

Os12t0154400-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:2678088:2681517:1 gene:Os12g0154400 gene_biotype:protein_coding transcript_biotype:protein_coding description:t-snare domain containing protein. (Os12t0154400-00)
Sequence

TCGTCTCCCCCTCGCACCGCCGCCGCCGCCTCCCCCTTGCGCCGTCGCCGTCGCCGTCGC
CGAGGGTGGGCTTCAAGGTGGACGCGGAGAAAGCGAGGAGGCGAGCTCTCCTCTCTTCCC
CTCTCGCCGGCTCGCGAATCAGTGCTGCGCGGAGAGATGAGATCTGACAGGAGGAAGCCG
TAGGCGTTAGCTGCTACTCTGCGTTGGCGATGTCGAGGGTTCGCGACAGGGCCGAGGACT
TCAAGGAGTCCGTCCGCGTCGCCGCGCTCGGCCATGGGTACACGGAGTCTCAGTTAGCCG
CGCTCATGTCTTCTTTCATCATCCGGAAGCCGCCCCCCAAATTACCCTTTACAAAGGCTG
CAATCAAGACGCTTGAGAGTATCAGGGAACTGGAGAAGTTTATTGTGAAGCATAGGAAGG
ACTATGTTGACATGCATCGCACCACGGAGCAAGAAAGGGACAACATTGAGCATGAGGTCA
GTGTTTTTGTAAAAGCATGCAAGGAACAAATAGATATCCTAAAGAACAGGATCCATGAAG
AAAAAGGTGGAAGTACAAAGACATGGCTTGGTACAAGCGATGAGAGCTCCCGGTTGGATT
TGATAGCTCACCAGCATGGTGTGGTTTTGATTTTGAGTGAGCGTCTTCACTCAGTAACTG
CACAATTTGATCGTCTTCGGACCATGCGTTTTCAAGATGCTATTAACAGAGCGATGCCAA
GAAAACGGATTCAGAAGAAACGAGAAACCAAAGCTGCTGAACCATCTAAGCCAAACCTTG
TATTAAAATCTGATGTTTCAAAGGTTGAAGATCAGGAGGTCTCTACTGCACCACTAAGAG
TTCAAGAACAACTCTTGGATGATGAAACAAGAGCTCTTCAGGTGGAGTTGACAAATCTTC
TTGATGCTGTCCAAGAAACAGAGACAAAGATGATAGAGATGTCAGCACTTAATCATCTCA
TGTCAACACATGTTCTACAACAAGCTCAGCAGATACAGTATTTATATGACCAGGCAGTTG
AAGCTACAAACAATGTGGAGCGTGGGAACAAGGAGCTATCCCAGGCGATCCAGCGCAACA
GCAGCAGTAGAACCTTCCTCCTGCTTTTCTTCTTTGTTCTTACCTTTTCCGTCCTCTTTC
TGGATTGGTACAGCAAATGAAGCTTATGTAAACGCCGTGATTTTTTTTTCTTTTCATTCT
GAAAGTGGATCAAGTTATCAGTGCATCCATGTCTCGCTAGGTTTACTGGCCTTTTACGTG
CAATGT