Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0143200-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:2121026:2124289:1 gene:Os12g0143200 gene_biotype:protein_coding transcript_biotype:protein_coding description:SPla/RYanodine receptor SPRY domain containing protein. (Os12t0143200-01)
Sequence

ATGGCGGACGCCGCCGCCGACGACGATGCGCCTCCCTCCCCACCCCCTTCCGCGTTCCAC
CCCGCGTCCGCCGATACCCCCATGTCCGACGCCACCCCATCCGCCGCCGATACCCCAAAT
CTCCCCGACACCCCCGCCTCCGCCTCCGCCGAACCCGAGACCCCCTTCTCCGACGCCGCG
CTCGCCGATGCATCCGATGCTGATGCCTCGGGCGTCGCCGCGCCACCCGACGACGACGGG
ACCAACCCGTTGGGCGGCGCCATGAAGCACATGGCCCTCGCGCCCCCGGCGCCGCCGAGC
AAGAAGTCCAAGAAGAAGAACAGCAACAGCGTCTGGACCAGGCCCAACTCCCGCAAGGGC
AAGAAGAAGGCCAAGCAGCCGGCCAACGCCCTCGCCGGCGGCAGCGGCGGCGCCAACGGC
CGCCTCCCCAAGCCCTCCAGCGGCGAGGATGAGCTCGTCCTCACCCCGGCGCCCCGATTC
GCCGCCGAGCGCAACGACGACGCGCCCGATCGGCCCGTGCTCCTCTCCCGCGTCTTCAAG
TCCGACAAGGTCGAGGTCTCCGACGACCGCCTCACCGCCGGCAGCACAAAGGGCTACCGG
ATGGTGCGCGCCACCCGCGGCGTCGCTGCCGGCGCTTGGTACTTCGAGGTCAAGGTCCTT
CACCTCGGCAGCACCGGCCACACCCGCCTTGGATGGGCTACCAACAATGCTGACATCCAC
GCACCCGTTGGCTACGATGTGTTTGGATTCGGATACCGCGACATGGATGGCACCAAGGTG
CACAAGGCATGGAGGGCCAATTACGCTGAGCAAGGCTATGGCGATGGCGATGTCCTCGGC
TTCTACATTCATCTTCCTGACGGGGAGCTGTATGAGCCCAAGCAGCCCTTCCTGGTTCAC
TACAAGGGGCTTCCTTTCCGCGCAGAAGCTCCCAAGGCGGCTGAGCAGAAGACGCCGGAT
CCAGTTCCTGGTAGCGAGATATGCTACTTCAAGAATGGGATATGCCAGGGCACTGCTTTT
GTGGACATTCCTGGAGGGCGGTACTACCCAGCTGCGTCAATGTATACACTGCCTGACCAA
CCAAACTGTCAAGTCAGGTTCAACTTTGGTCCCAATTTTGAGTTCTTCCCAGAAGATTTT
GGAGGTCGATTGATTCCTCGACCAATGAGTGACGTGCCTTATAGACCATTTGAGCTGGCG
AATGGCGGGCCTGCTGAAAATGGTACTGCTGAAAAAAACATTTAA

Peptide Sequence

PEP ID

Os12t0143200-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:2121026:2124289:1 gene:Os12g0143200 transcript:Os12t0143200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:SPla/RYanodine receptor SPRY domain containing protein. (Os12t0143200-01)
Sequence

MADAAADDDAPPSPPPSAFHPASADTPMSDATPSAADTPNLPDTPASASAEPETPFSDAA
LADASDADASGVAAPPDDDGTNPLGGAMKHMALAPPAPPSKKSKKKNSNSVWTRPNSRKG
KKKAKQPANALAGGSGGANGRLPKPSSGEDELVLTPAPRFAAERNDDAPDRPVLLSRVFK
SDKVEVSDDRLTAGSTKGYRMVRATRGVAAGAWYFEVKVLHLGSTGHTRLGWATNNADIH
APVGYDVFGFGYRDMDGTKVHKAWRANYAEQGYGDGDVLGFYIHLPDGELYEPKQPFLVH
YKGLPFRAEAPKAAEQKTPDPVPGSEICYFKNGICQGTAFVDIPGGRYYPAASMYTLPDQ
PNCQVRFNFGPNFEFFPEDFGGRLIPRPMSDVPYRPFELANGGPAENGTAEKNI

Transcript Sequence

Transcript ID

Os12t0143200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:2121026:2124289:1 gene:Os12g0143200 gene_biotype:protein_coding transcript_biotype:protein_coding description:SPla/RYanodine receptor SPRY domain containing protein. (Os12t0143200-01)
Sequence

AGCAGCAAAACCACCCAAATCCCCAATTCCGACCCCAAATCGCACAGAAACCCTCCCCAT
GGCGGACGCCGCCGCCGACGACGATGCGCCTCCCTCCCCACCCCCTTCCGCGTTCCACCC
CGCGTCCGCCGATACCCCCATGTCCGACGCCACCCCATCCGCCGCCGATACCCCAAATCT
CCCCGACACCCCCGCCTCCGCCTCCGCCGAACCCGAGACCCCCTTCTCCGACGCCGCGCT
CGCCGATGCATCCGATGCTGATGCCTCGGGCGTCGCCGCGCCACCCGACGACGACGGGAC
CAACCCGTTGGGCGGCGCCATGAAGCACATGGCCCTCGCGCCCCCGGCGCCGCCGAGCAA
GAAGTCCAAGAAGAAGAACAGCAACAGCGTCTGGACCAGGCCCAACTCCCGCAAGGGCAA
GAAGAAGGCCAAGCAGCCGGCCAACGCCCTCGCCGGCGGCAGCGGCGGCGCCAACGGCCG
CCTCCCCAAGCCCTCCAGCGGCGAGGATGAGCTCGTCCTCACCCCGGCGCCCCGATTCGC
CGCCGAGCGCAACGACGACGCGCCCGATCGGCCCGTGCTCCTCTCCCGCGTCTTCAAGTC
CGACAAGGTCGAGGTCTCCGACGACCGCCTCACCGCCGGCAGCACAAAGGGCTACCGGAT
GGTGCGCGCCACCCGCGGCGTCGCTGCCGGCGCTTGGTACTTCGAGGTCAAGGTCCTTCA
CCTCGGCAGCACCGGCCACACCCGCCTTGGATGGGCTACCAACAATGCTGACATCCACGC
ACCCGTTGGCTACGATGTGTTTGGATTCGGATACCGCGACATGGATGGCACCAAGGTGCA
CAAGGCATGGAGGGCCAATTACGCTGAGCAAGGCTATGGCGATGGCGATGTCCTCGGCTT
CTACATTCATCTTCCTGACGGGGAGCTGTATGAGCCCAAGCAGCCCTTCCTGGTTCACTA
CAAGGGGCTTCCTTTCCGCGCAGAAGCTCCCAAGGCGGCTGAGCAGAAGACGCCGGATCC
AGTTCCTGGTAGCGAGATATGCTACTTCAAGAATGGGATATGCCAGGGCACTGCTTTTGT
GGACATTCCTGGAGGGCGGTACTACCCAGCTGCGTCAATGTATACACTGCCTGACCAACC
AAACTGTCAAGTCAGGTTCAACTTTGGTCCCAATTTTGAGTTCTTCCCAGAAGATTTTGG
AGGTCGATTGATTCCTCGACCAATGAGTGACGTGCCTTATAGACCATTTGAGCTGGCGAA
TGGCGGGCCTGCTGAAAATGGTACTGCTGAAAAAAACATTTAACTGCAGTGAAAATTCTG
CTTTAGTTATGTAGAATAGAGCATAATCATGTAATCCGGTTAAAGAGCGCGCAGGCTGAT
TGGTTAGTTTGTCTGGTTATTAAATATTTTATCACCTGAGGTTCTTCTGGTTTGGCCATT
TGACCTTCGTGTAGCAACGCATGGCTTCAATCTTTCCCATCAACGCATGGCTTTAATACT
GTTAACACAAGATTTCGTCAAT