Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0140700-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:1973806:1974672:-1 gene:Os12g0140700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os12t0140700-01)
Sequence

ATGGAGGTGGATGCCTCCGCGGTCGCAAGAGCACTACCAAGAGATTTCCCTCCCATCGAG
AACTTGAGCTTCGAAGGCTTCCCCCGTTATACTTTCAAGATCGGCAACCGGATCCACTGC
ACCAACTTGATGTATCGCCCAGGTAGTCGGACGCTATTAACGCAGGAAGAAGCTCATGAG
ATCATTCGCGAGGGCTTGAGGTCTGACATTCGTCGGGGCCGCATACAACTGAACGCCGAC
TTCTTGCAGCAGCTTGTTGATCAGGTTCGCGATCATATTCTTCAGCGTCAGCGCCGTGGC
ACTGCCACTGCCATGGATGGAGTAGTGGAGGTGGAGGATGCGTACAGGAACGGTGGGTTC
GGCGCTATCCCCGCGTCGAGCAAGGCCATGGCCGAGCTGCAGGAGGCGATGGCAAGCGAC
GCCAGGGAACGCGGGTGCGCTGTGTGCCTGGAGGATTTCGAGGCGGGAGAGAAGCTGACG
AGGATGCCCTGCTCGCATTGCTTCCATGCGACCTGCATCTTGGATTGGCTCCGCCTCAGC
CATCGTTGCCCGCTCTGCAGATTCCCGATGCCAACCCAAGACCAATCTTACTAG

Peptide Sequence

PEP ID

Os12t0140700-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:1973806:1974672:-1 gene:Os12g0140700 transcript:Os12t0140700-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os12t0140700-01)
Sequence

MEVDASAVARALPRDFPPIENLSFEGFPRYTFKIGNRIHCTNLMYRPGSRTLLTQEEAHE
IIREGLRSDIRRGRIQLNADFLQQLVDQVRDHILQRQRRGTATAMDGVVEVEDAYRNGGF
GAIPASSKAMAELQEAMASDARERGCAVCLEDFEAGEKLTRMPCSHCFHATCILDWLRLS
HRCPLCRFPMPTQDQSY

Transcript Sequence

Transcript ID

Os12t0140700-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:1973806:1974672:-1 gene:Os12g0140700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os12t0140700-01)
Sequence

GTTTACCTCCTGATCCATTCCCCCCACCCCGCCTATTGATTGATCTGCTCGCCTCCGCCA
TTGTCGTTGTCGATCTCTTCTGAAGGGTGAGCGCCGGCTGCGGCAGGGAGGCGTGTGTTG
CTGCCGCAGATCGATGGAGGTGGATGCCTCCGCGGTCGCAAGAGCACTACCAAGAGATTT
CCCTCCCATCGAGAACTTGAGCTTCGAAGGCTTCCCCCGTTATACTTTCAAGATCGGCAA
CCGGATCCACTGCACCAACTTGATGTATCGCCCAGGTAGTCGGACGCTATTAACGCAGGA
AGAAGCTCATGAGATCATTCGCGAGGGCTTGAGGTCTGACATTCGTCGGGGCCGCATACA
ACTGAACGCCGACTTCTTGCAGCAGCTTGTTGATCAGGTTCGCGATCATATTCTTCAGCG
TCAGCGCCGTGGCACTGCCACTGCCATGGATGGAGTAGTGGAGGTGGAGGATGCGTACAG
GAACGGTGGGTTCGGCGCTATCCCCGCGTCGAGCAAGGCCATGGCCGAGCTGCAGGAGGC
GATGGCAAGCGACGCCAGGGAACGCGGGTGCGCTGTGTGCCTGGAGGATTTCGAGGCGGG
AGAGAAGCTGACGAGGATGCCCTGCTCGCATTGCTTCCATGCGACCTGCATCTTGGATTG
GCTCCGCCTCAGCCATCGTTGCCCGCTCTGCAGATTCCCGATGCCAACCCAAGACCAATC
TTACTAGGCTGTAAGAGGATAACGCCGCGGCCAGAGATGAAACAAATCATACAACTCTTG
TGCTTACTCATGCTCCATCAAACACCATTCCATTCATGTACCATCTGTCATTTATGATCG
AATAACTAATCATATGCTGTGTCGGTG